BAC Information

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BAC

Clone NameMSMg01-172O10
Chromosome8 (Build37)
Map Location 45,867,813 - 45,868,119
singlet/doubletsinglet
Overlap geneLOC100039508
Upstream genenone
Downstream geneFat1, LOC100039673, Mtnr1a, EG622523, F11, Klkb1, Cyp4v3, BC035537, Tlr3, Sorbs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172O10.T7 (MSMg01no172_o10.b1)MSMg01-172O10.TJ (MSMg01no172_o10.g1)
ACCAG368672AG368673
length720723
length of high quality
(start - end)
312 (44 - 355)284 (74 - 357)
definitionCHROMAT_FILE: MSMg01no172_o10.b1 PHD_FILE: MSMg01no172_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:28 2005CHROMAT_FILE: MSMg01no172_o10.g1 PHD_FILE: MSMg01no172_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTGGAGAGCCATATTTCCTGTTAACTAATTGAGAAATTAATCACTG
GCAACTCTTTGGCAAATGTCTCTGGAATCGCTTTTAATTTGCATGAGAGT
TAAAAGAGGTGAAACGGGGGCTGATTTACTACCGTGTGCTGTGATGCGCT
AAGGACAACACTGTTCTTGAGTTCTGCTATCAGCTTTAACCAAGGGGAGA
GTCTGATCATGACCTGGAAAAGGCAGAAAGACAAGGGACAGACATTGTCA
ACTGAACGTGTGCGACACTTATCTTGACATTAATGATGACCTCTCTACTG
TACGTTAAATGGCTTCNAAACAGANTCCCAAAAATAATAAAAAATTTTGG
TTCAACTCATCTCAATTCAAAGAAAACATTAAGACATGTTGGGGGGGGCG
GATGGGGCACTGAGGTGATGACTCAGCTCTTAAGATCACATACTGTATTT
ACAAAAGAGGTGAGTTCATATCCCAGTAACCATGTCAGACAGCTCGCCTT
TGCCGAAAGCTCCAGTCCAGGGAGATCTGAGGTCTTCCACCTCTACTCAC
ATGCACCTATCCACAAAACATGCAATGCATACAAGTTTGCAAATCCCATA
CATCTTCCAGTCAAAGTGTGCAACATTTAAAAATACGTACTACTTGGTAC
ATTCCAATTTTTCAGGTGAT
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAG
AAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCAAAT
CAAACCAGCCCTGAGATTCCATCTCACACCAGTAAGAATGGCTAAGATCA
AAAATTCAGGTGACATTAGATGCTGGCAAGGATGTGGAGAAAAAGGGGCA
CTCCTCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATC
AGTCTGGCTGGTGGGATTGAAAAGCTTGTACAACCACTCTGGAAATCAGT
CTGTCGGTTCTTCTTACCATTGCANACACTACTACAGGAGGATCCCGCAA
TACCTCTCCTGGGCATATATCAAAAAAATGTTCCAACTGGTAAGAAAGAC
ACATGCTCCAGTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTG
GAAAAAACCCAGATGCCCCCTCAACAGAGGAATGGATACAGAAATTGTGG
TACATTTACACAATGGAGCACTACTCAGCTATTTAAAAGAATGAATTTAT
GAAATTCTTAGGCAAATGGATTGACCTGGAGGCCATCATCCTGAGTGAGG
TAACCCAATCACAAAAGAACTCACATGATATGTACTCACTGATAAGTGGA
TATTAGCCCAGAAACTTATTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_o10.b1 MSMg01no172_o10.b1 CHROMAT_FILE:
MSMg01no172_o10.b1 PHD_FILE: MSMg01no172_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:28 2005
         (312 letters)



>mm_chr8_45867609_45868320
          Length = 712

 Score =  555 bits (287), Expect = e-162
 Identities = 302/307 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtggagagccatatttcctgttaactaattgagaaattaatcactggcaactc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtggagagccatatttcctgttaactaattgagaaattaatcactggcaactc 264

                                                                       
Query: 65  tttggcaaatgtctctggaatcgcttttaatttgcatgagagttaaaagaggtgaaacgg 124
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttggcaaatgcctctggaatcgcttttaatttgcatgagagttaaaagaggtgaaacgg 324

                                                                       
Query: 125 gggctgatttactaccgtgtgctgtgatgcgctaaggacaacactgttcttgagttctgc 184
           |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 325 gggctgatttactaccgtgtgctgtggtgcgctaaagacaacactgttcttgagttctgc 384

                                                                       
Query: 185 tatcagctttaaccaaggggagagtctgatcatgacctggaaaaggcagaaagacaaggg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatcagctttaaccaaggggagagtctgatcatgacctggaaaaggcagaaagacaaggg 444

                                                                       
Query: 245 acagacattgtcaactgaacgtgtgcgacacttatcttgacattaatgatgacctctcta 304
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 445 acagacattgtcaactgaacgtgtgcgacacagatcttgacattaatgatgacctctcta 504

                  
Query: 305 ctgtacg 311
           |||||||
Sbjct: 505 ctgtacg 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)