BAC Information

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BAC

Clone NameMSMg01-173B11
Chromosome8 (Build37)
Map Location 33,894,376 - 33,894,724
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041340, Nrg1, 2010007E15Rik, EG666589, EG546052
Downstream geneLOC100042715, LOC628408, EG628412, Wrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173B11.T7 (MSMg01no173_b11.b1)MSMg01-173B11.TJ (MSMg01no173_b11.g1)
ACCAG368804AG368805
length729729
length of high quality
(start - end)
320 (46 - 365)569 (77 - 645)
definitionCHROMAT_FILE: MSMg01no173_b11.b1 PHD_FILE: MSMg01no173_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:42 2005CHROMAT_FILE: MSMg01no173_b11.g1 PHD_FILE: MSMg01no173_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGC
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAGGCTTGTACAACCACTCTGGAGATCAGTCTGGCGGTTCCTCAG
AAAACTGGATATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGTTTTTTTCTGCCCCCCCCCCCACATGCTCCACTAT
GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAGGAACCCAGAT
GCCCCTCAACAGAGGAATGGATACAGAAGATGTGGTACATCTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTGGCCAA
ATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGCAACACATTCACCAA
GGAACTCACACCATATGTACTCACTGATAAGTGGATATTAGCCCCAAACC
TAAGATACCGAAGATATAAGACACCATTTCCCTAAACACATGAACACTCC
AGAAAAATCGAATAATGAACTTGCGACCT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAGCCATTTCTGAAATGGCCCTA
AACATGTGAAATCATGTTTTCACCATTTATATTTATAAAATAAGAATATG
GAAATACTTTAAAAATCATTGGCAGTTTGAAGCCAAAATGAATGCTTTTC
GTAGAAGCAAATGTACACGTTTCTTAGCTTAGATTTCCTTAAACTCTACT
TTTAAAAATGTTTTTTTTTTTAATGCTTTAACCTCCCTTCTAGTCCACTA
CCCACCAGAGGTAGTGGACAAGAAAGGTTATAGGATACGGGGGAAGTGGA
CCTGTTTAGAATTGTATTTTTTGCAGTAAATTTCATCTGTGTTGTCAGGA
AATAAGCAGTTCTGTTCACAAAATCAGCAGTTTAGCTCATAGGATTCAGC
AGCAGCAGCTTGATCCACTTGCAACCACTTCACGAATATACCAGCAGTCC
AGTTCAGTGGTGTCAGGATAGTAAACACGAATCAGTGGCATGACCTAACA
GAGGCAGCCAGGCCTCAGCCTAATGGCAGGAGTCATCAGGAGCAACTATG
CCCAGCAGGTGTGCTAGGAGAAGCTCTCTGCTGTGCCTCCCTCCAAGAAA
TGAAGATTAAGGAAGACAAAGAAGCAAAGAAGTGTGGCTAAGCTAGCTAT
GTAAACAAGCCTCTCTCACAGTCCATTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_b11.g1 MSMg01no173_b11.g1 CHROMAT_FILE:
MSMg01no173_b11.g1 PHD_FILE: MSMg01no173_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:42 2005
         (569 letters)



>mm_chr8_33894375_33895343
          Length = 969

 Score =  598 bits (309), Expect = e-175
 Identities = 333/349 (95%), Gaps = 13/349 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagccatttctgaaatggccctaaacatgtgaaatcatgttttcaccatttatatttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 350 ctagccatttctgaaatggccctaaacatgtgaaatcatgttttcagtatttatatttat 291

                                                                       
Query: 61  aaaataagaatatggaaatactttaaaaatcattggcagtttgaagccaaaatgaatgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aaaataagaatatggaaatactttaaaaatcattggcagtttgaagccaaaatgaatgct 231

                                                                       
Query: 121 tttcgtagaagcaaatgtacacgtttc-------------ttagcttagatttccttaaa 167
           |||||||||||||||||||||||||||             ||||||||||||||||||||
Sbjct: 230 tttcgtagaagcaaatgtacacgtttcttactaacatgtgttagcttagatttccttaaa 171

                                                                       
Query: 168 ctctacttttaaaaatgtttttttttttaatgctttaacctcccttctagtccactaccc 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 ctctacttttaaaaatgtttttttttttaatgctttaacctcccttctagtccactaccc 111

                                                                       
Query: 228 accagaggtagtggacaagaaaggttataggatacgggggaagtggacctgtttagaatt 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 accagaggtagtggacaagaaaggttataggatacgggggaagtggacctgtttagaatt 51

                                                            
Query: 288 gtattttttgcagtaaatttcatctgtgttgtcaggaaataagcagttc 336
           |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 50  gtattttttggagtaaatttcatctgtgttgtcaggaaataagcagttc 2


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)