BAC Information

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BAC

Clone NameMSMg01-173K02
Chromosome8 (Build37)
Map Location 75,840,053 - 75,840,543
singlet/doubletsinglet
Overlap geneLarge
Upstream geneKlf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1, Sin3b, F2rl3
Downstream geneLOC100039001, LOC666134, Crry-ps, LOC666146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173K02.T7 (MSMg01no173_k02.b1)MSMg01-173K02.TJ (MSMg01no173_k02.g1)
ACCAG369181AG369182
length708783
length of high quality
(start - end)		492 (35 - 526)---
definitionCHROMAT_FILE: MSMg01no173_k02.b1 PHD_FILE: MSMg01no173_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:21 2005CHROMAT_FILE: MSMg01no173_k02.g1 PHD_FILE: MSMg01no173_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCTTAAA
AGTTTTCCTTTTACTGCAGCTCCACCTTTTAGATACCTGTCACACAAAAC
AGAGCCTCTTATGCACTCCCTATTCCTCTGTGTTTGGGATCATAAAGTAA
AAAATAAACTCTATAAATGAAATAGCTTTCTTGATTTATGTTCATTTCTA
GATCTGAGCCTGGCACAGATCTGGTGCTTAGAATGTCTTTGTAGAGTGAG
TGAAGATACTTGGAGTTCCAAAATTTGGGTACCTTTGAGAAGTGTACAGG
TACCATTGGATGGTGGCCTCATGGATATATCCTTGGGTGAGAAAGAAAGA
TATTGGATGTATTGATATCTGTAGTGGACTTTTGTTTTGATTGCTTGCTT
GTTTGTTTGTTTGTTTAATCTGAGTCTCTTCATGTAGCTATGGCTGGCTT
TTGTAGTAGTGATAGGCATCTGAGAGAATCAGTTTAAAGCTGAAAGGATG
TATTTTAGCTCAGAGTTTCAGAGATCTTGGTCCACTGGGAGATGGCTCTG
TTGCTTTCAGTCTCTGACAAACACCATGGAGGAAGGTCATGGCCCCTGAA
AGCTGAGCACCGCATGCCAGCTAGGAAACGGTTAGAAGAGTACGAAGAGA
CCAAGGGCAGTGTTTCCCTTCAAGAGTACTCCACTCTTCAGTAACCTAAT
TTCTTCCT

NNNNAAAANNAAAANNNNNTTAAGAAGAGGCGGGNCCNCCNCAANNNNNC
AAGGTAGAAAGGGGTAGGCCGGGGGGNGGNTGGNGTGCGAAAAGGANGNA
NNNANNNNNGGNNTCCAAAAAAAAGGAANGNNNGNNNGANAANNNGNAAG
NNGAAAAAAAAAAANATTTCTTCCCGAAAAAAGGGGGANAAGGANANNNN
NNANNNAAGGGGANANANAGGGAAANAGNAAANGGNNNNAANNNNNAGGG
ANAANAAAGNAAGGGGGAGAGANNNNANANNAAAGAGAGGGGAGGNNNAG
AATTTAANNNANNNAGGAANGGAAAGAAGGNAAGAGAGAANAGAANAGAG
GGAANAGGNGGGGGGAAATATTTGTTTTTTANGGGGGAGGNGGGAAAGAA
GAANNAGNTATTGTTTTTATCCCCGGCCGCCAAATAAGAAAGTGTCTGGG
NCTTAAAGGGCAACGGTGAAAAACAAAAAAAAAAAAAGCCAAAGAGGGGG
TGCTTGATGTTAAATGGATAAAGCTGGTGATTATGTGAGGGTCTTGAGTG
CATGTAGGAAAAAGGGAATGAGATTGTGGCGGTGAATTAAGGGAAAAATG
AATATGGAGGCAAGAGGGAATTAAAAGAAAGGTTTTGGAGGGGAAAAGAG
TGGGGTTTTGAGGGGAAATGGCGTGGGAGGAGAAGAAAAAGGGGGGAGTG
AATAAGAGAGGAAAAAGGGGTATTTTTATGGGAACCGTGAAAGAGTAAAG
GAAGGGGGGAAAAGAAGGGTTAAAAGGGGGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_k02.b1 MSMg01no173_k02.b1 CHROMAT_FILE:
MSMg01no173_k02.b1 PHD_FILE: MSMg01no173_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:21 2005
         (492 letters)



>mm_chr8_75839993_75840884
          Length = 892

 Score =  884 bits (457), Expect = 0.0
 Identities = 481/491 (97%), Gaps = 4/491 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcttaaaagttttccttttactgcagctccaccttttagatacctgtcacacaaaa 65
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gaattcttaaaagttttaattttactgcagctccaccttttagatacctgtcacacaaaa 492

                                                                       
Query: 66  cagagcctcttatgcactccctattcctctgtgtttgggatcataaagtaaaaaataaac 125
           |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cagagcttcttatgcagtccctattcctctgtgtttgggatcataaagtaaaaaataaac 432

                                                                       
Query: 126 tctataaatgaaatagctttcttgatttatgttcatttctagatctgagcctggcacaga 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tctataaatgaaatagctttcttgatttatgttcatttctagatctgagcctggcacaga 372

                                                                       
Query: 186 tctggtgcttagaatgtctttgtagagtgagtgaagatacttggagttccaaaatttggg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tctggtgcttagaatgtctttgtagagtgagtgaagatacttggagttccaaaatttggg 312

                                                                       
Query: 246 tacctttgagaagtgtacaggtaccattggatggtggcctcatggatatatccttgggtg 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tacctttgagaagtgtacaggtaccattggatggtggcctcatggatatatccttgggtg 252

                                                                       
Query: 306 agaaagaaagatattggatgtattgatatctgtagtggacttttgttttgattgcttgc- 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 251 agaaagaaagatattggatgtattgatatctgtagtggacttttgttttgattgcttgct 192

                                                                       
Query: 365 ---ttgtttgtttgtttgtttaatctgagtctcttcatgtagctatggctggcttttgta 421
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 tgtttgtttgtttgtttgtttaatctgagtctcttcatgtagctatggctggcttttgta 132

                                                                       
Query: 422 gtagtgataggcatctgagagaatcagtttaaagctgaaaggatgtattttagctcagag 481
           || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 131 gtggtgataggcatctgagagaatcagtttaaagctgaaaggatgtattttagttcagag 72

                      
Query: 482 tttcagagatc 492
           |||||||||||
Sbjct: 71  tttcagagatc 61


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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