BAC Information

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BAC

Clone NameMSMg01-173N22
Chromosome8 (Build37)
Map Location 74,844,029 - 74,844,253
singlet/doubletsinglet
Overlap geneKlf2
Upstream geneMyo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405
Downstream geneEps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1, Sin3b, F2rl3, Large
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173N22.T7 (MSMg01no173_n22.b1)MSMg01-173N22.TJ (MSMg01no173_n22.g1)
ACCAG369349AG369350
length763743
length of high quality
(start - end)
225 (130 - 354)348 (385 - 732)
definitionCHROMAT_FILE: MSMg01no173_n22.b1 PHD_FILE: MSMg01no173_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:37 2005CHROMAT_FILE: MSMg01no173_n22.g1 PHD_FILE: MSMg01no173_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTGAGACCTGAGTCCCTCGGAGCCAACCCATTAAACTGCCACACCCC
CTTGGCAGTGTCATATTTTCTCCGGACAGTATCCATTTCCCTTCTGGAGG
ATGGACAGGGTCTTCCTCTGTAACCTAGCCTGTTCCTGAACTCGCGGCCA
TCCCCCTGCCGCAGATCCCGGGAATGAGGCCAGGCGCCCACCTGTGTGTG
TACGCAGATGCGCCTTTAGGTGCGAGCTCTTGGTGTAGGTCTTGCCGCAG
TTGGTGTAGCTGCAAGTATGTGTGGCGGCGCGCTTGCGGGGCCAGGAGCG
GCGGTTTTGNGTGGGTTCGGAAACAGAACCTCTAGTGTTGTAGAGGGAGG
TGTGAGGTTTTTGTGCGTGAAAGGTGATCCAAAAATCGGTGGGGGCGCCG
CTGTCTCCGCGTCCTCTAATAGACCGAAAGCGCCAGGCGCTGTTATTCCC
GCACCGAAATTTGTCGTTTTTACCGCCCACCCTTTTTTTTTTACACCATC
TCACCTCTTTAATCTTCCTGTGTTAAACCCCACATCGCTATGTACCACTT
TTTTCTTTTAACCACCCATCCTTCTTATTTTTTTCCCTTCCTCCCTCCCT
TTTCCCCCATACAATACCTTCTCCCCCTCCCCAAATCCCTTTTATTAACC
GCCACCCTTCCCCCTCCCCTCTTCCTCCTCCCCCTATTTCCTCGCATCTT
CTTTCTTCCCGCC
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTGAGCCTGGGTCCCTAGGTGG
GTTGTGGCTGGATATCAGGTTCACCGAGGGGATGGGGCGTGGGGAGACAC
TGCTTGCCAGCTTGACTCTTCTTAATCACCCAGATATAAGGTGTATATCT
GACTTTCCAGGCTGAAGGAGATGCAGCCGCTCTCAACCGCCGCATCCAAC
TGCTGGAGGAGGAACTGGACCGGGCTCAGGAGCAGCTGGCCACAGCCCTG
CAGAATCTGGAAGAGGCAGAGAAGGCTGCTGATGAGAGTGAGAGGTAGGA
TGCTTCTGACCTGTTTTATACAGCCCCCACCCCGGTGTGGTGGTACATAC
CTGTAAGTTCAGTGCTGAGGCCAGCCTGGGCTACATGAAGCCTTTCCTGA
CTTTAAAAAGATGTGAGAGCTCAGTATTTAAGTGCTTAAATCCTACCACT
TGAAAAGCCAGTGTGGTTTCACAAGAGGACTTGGGGTTTGCTGACTGTCA
GCCTACCTCCAGGTTCAGTGAGAGATCCTGTCTCAAGGGAATGAGACAGA
AAGTGACAGAGCTGGATACCTGACATCCTTCTCTGGTCTCCATATGCACA
TACACAAATGCACATAGACATGTATGAATGGAAAAAATTTTGTGATGGTA
CTAATGACCTTGGAGCTGAAGGGATTTGAAGATCTGGCTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_n22.b1 MSMg01no173_n22.b1 CHROMAT_FILE:
MSMg01no173_n22.b1 PHD_FILE: MSMg01no173_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:37 2005
         (225 letters)



>mm_chr8_74843736_74844360
          Length = 625

 Score =  435 bits (225), Expect = e-127
 Identities = 225/225 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatccatttcccttctggaggatggacagggtcttcctctgtaacctagcctgttcctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tatccatttcccttctggaggatggacagggtcttcctctgtaacctagcctgttcctga 459

                                                                       
Query: 61  actcgcggccatccccctgccgcagatcccgggaatgaggccaggcgcccacctgtgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 actcgcggccatccccctgccgcagatcccgggaatgaggccaggcgcccacctgtgtgt 399

                                                                       
Query: 121 gtacgcagatgcgcctttaggtgcgagctcttggtgtaggtcttgccgcagttggtgtag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gtacgcagatgcgcctttaggtgcgagctcttggtgtaggtcttgccgcagttggtgtag 339

                                                        
Query: 181 ctgcaagtatgtgtggcggcgcgcttgcggggccaggagcggcgg 225
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ctgcaagtatgtgtggcggcgcgcttgcggggccaggagcggcgg 294


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 625
Length adjustment: 9
Effective length of query: 216
Effective length of database: 616
Effective search space:   133056
Effective search space used:   133056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)