Query= MSMg01no174_a09.b1 MSMg01no174_a09.b1 CHROMAT_FILE:
MSMg01no174_a09.b1 PHD_FILE: MSMg01no174_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:48 2005
(316 letters)
>mm_chr8_99838459_99839175
Length = 717
Score = 598 bits (309), Expect = e-175
Identities = 312/313 (99%), Gaps = 1/313 (0%)
Strand = Plus / Minus
Query: 5 gaattcagggttactaaatcag-aaaaaaaaaaagataggcaaaggaagaggaacagaga 63
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaattcagggttactaaatcagaaaaaaaaaaaagataggcaaaggaagaggaacagaga 458
Query: 64 catgcagagtgatttgccttagtcttgggctaaacactaattcatatacgtgggatgaga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 catgcagagtgatttgccttagtcttgggctaaacactaattcatatacgtgggatgaga 398
Query: 124 ttctgtgaggactggtccaaactagcattcttaatggatcaatgggagtatgaaagatta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ttctgtgaggactggtccaaactagcattcttaatggatcaatgggagtatgaaagatta 338
Query: 184 gagttctgataaaatcacatgaaaaagtctcaagaagttattcaattagaatcttagaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gagttctgataaaatcacatgaaaaagtctcaagaagttattcaattagaatcttagaaa 278
Query: 244 ctccacttcttataaatagagctgatgtgttcttctcagagaaaaacactcactttaaat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ctccacttcttataaatagagctgatgtgttcttctcagagaaaaacactcactttaaat 218
Query: 304 cattcctaacaaa 316
|||||||||||||
Sbjct: 217 cattcctaacaaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 717
Length adjustment: 9
Effective length of query: 307
Effective length of database: 708
Effective search space: 217356
Effective search space used: 217356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no174_a09.g1 MSMg01no174_a09.g1 CHROMAT_FILE:
MSMg01no174_a09.g1 PHD_FILE: MSMg01no174_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:48 2005
(251 letters)
>mm_chr8_99747765_99748415
Length = 651
Score = 451 bits (233), Expect = e-131
Identities = 246/251 (98%), Gaps = 2/251 (0%)
Strand = Plus / Plus
Query: 1 gaaaccctgtctcaaaaaaaaaaaaaaacaaaaaaacaaaacaaaaacaaaaaagagaaa 60
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 203 gaaaccctgtctc--aaaaaaaaaaaaacaaaaacacaaaacaaaaacaaaaaagagaaa 260
Query: 61 tgtacatatgatcataacatatattggaatgtataatgttatccatatgtattatgagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtacatatgatcataacatatattggaatgtataatgttatccatatgtattatgagtt 320
Query: 121 aataaatgcaaaagtattggtaataataaaaccatgttctgtgttaatatttaaaacttt 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 aataaatgcaaaagtattggtaataataaaaccatgttctgtattaatatttaaaacttt 380
Query: 181 tttatctgtcactattgtttcaaagagaaaaatatgaagaacatcaatgtacatatgaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttatctgtcactattgtttcaaagagaaaaatatgaagaacatcaatgtacatatgaca 440
Query: 241 atgtttttaag 251
||| |||||||
Sbjct: 441 atgcttttaag 451
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space: 155364
Effective search space used: 155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
