TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTTCCCCAATTGTTCTAGGTGTCTACCTATTATAGTATTAAAAA
AAACAAAACAATAAATTCTACAGTGTGCTGGAACTATAAAATCATTTGCT
GTAATTTAATATTCCTTTGGACTACATGAATATTAATCACAGCACAACCA
AGATGCAACATGGTTTACTGTTCAGTTGGATGTCTTAGATTCTAAATCTC
ATTATGTCACTAATAGCATTCCTTAAATCCACCGACAATAATCTATCTCT
GGCCTTATCTCTATGTTAATAACTGCAGGTACTCTAAAAATCACCTTAAT
TCTTCATGCTTTGTTCTACCATATATGATCCAATATATTCTTCGCTTTCT
TCCTTCTTGTCACTCATCTCCAATCTCGGAAATCTTCATTTCATCTTTTG
GAATCCCTCGTCAAGTACACAGTGGTCTAAAGCAGGTCTCTAAACATTCC
AATCACCTCCTGTCTTTAATGCTTTGTTCTCTACAGCATTTAAAAAAACC
TACAGAAGGGAATCAAATCATAGACTCAGGTGTGCACACATGTATCTGAG
TGGATCACAACACAGCTCCACTTGGTCAAGCTTCAAAATGCCTCTGAGTA
CTCCATTGATACCTAGCCAAAGGCCATATGTGACAGAGAGAAAATTGGGC
TAGCAGACTTAGGGATCTTAATTGATTGAAATCACTGTA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTCCCAAATATCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCTTCATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAACTGTTTATTGTACTAACGGAGGATCCA
GCAATACCTCTCCTGTTCATTTANCCCCAGACGNACCCCCTGGTAAGAAG
GACACATGCTCCACTATGTTCATACCAGCCTAATAAATAATAGCCAGAAG
CTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGNAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGCG
GATATTAGCCCTTAACCTATGATACCCAAGATATAAGATATTATTTCCTA
AACACATGAAACTCAAGAAAAATGATAATGAAGTGTGA

Query= MSMg01no174_a22.b1 MSMg01no174_a22.b1 CHROMAT_FILE:
MSMg01no174_a22.b1 PHD_FILE: MSMg01no174_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:50 2005
         (682 letters)



>mm_chr8_60606629_60607714
          Length = 1086

 Score = 1241 bits (642), Expect = 0.0
 Identities = 671/682 (98%), Gaps = 4/682 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatttccccaattgttctaggtgtctacctattatagtatt-aaaaaaaacaaaa 63
           |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 886 gaattcatttcctcaattgttctaggtgtctacctattatagtattaaaaaaaaacaaaa 827

                                                                       
Query: 64  caataaattctacagtgtgctggaactataaaatcatttgctgtaatttaatattccttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 caataaattctacagtgtgctggaactataaaatcatttgctgtaatttaatattccttt 767

                                                                       
Query: 124 ggactacatgaatattaatcacagcacaaccaagatgcaacatggtttactgttcagttg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 ggactacatgaatattaatcacagcacaaccaagatgcaacatggtttactgttcagttg 707

                                                                       
Query: 184 gatgtcttagattctaaatctcattatgtcactaatagcattccttaaatccaccgacaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 706 gatgtcttagattctaaatctcattatgtcactaatagcattccttaaatccaccaacaa 647

                                                                       
Query: 244 taatctatctctggccttatctctatgttaataactgcaggtactctaaaaatcacctta 303
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 646 taatctatctctggccttatctctatgttaataactgcaggaactctaaaaatcacctta 587

                                                                       
Query: 304 attcttcatgctttgttctaccatatatgatccaatatattcttcgctttcttccttctt 363
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 586 attcttcatgctttgttctaccatatatgatccaatatattcttcactttcttccttctt 527

                                                                       
Query: 364 gtcactcatctccaatctcggaaatcttcatttcatcttttggaatccctcgtcaagtac 423
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 526 gtcactcatctccaatctcggaaatcttcctttcatcttttggaatccctcgtcaagtac 467

                                                                       
Query: 424 acagtggtctaaagcaggtctctaaacattccaatcacctcctgtctttaatgctttgtt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 acagtggtctaaagcaggtctctaaacattccaatcacctcctgtctttaatgctttgtt 407

                                                                       
Query: 484 ctctacagcattt---aaaaaaacctacagaagggaatcaaatcatagactcaggtgtgc 540
           |||||||||||||   |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 406 ctctacagcatttaaaaaaaaaacctacagaagggaatcaaaccatagactcaggtgtgc 347

                                                                       
Query: 541 acacatgtatctgagtggatcacaacacagctccacttggtcaagcttcaaaatgcctct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 acacatgtatctgagtggatcacaacacagctccacttggtcaagcttcaaaatgcctct 287

                                                                       
Query: 601 gagtactccattgatacctagccaaaggccatatgtgacagagagaaaattgggctagca 660
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 286 gagtactccattgatacctagccaaaggccatatgtgacagagaggaaattgggctagca 227

                                 
Query: 661 gacttagggatcttaattgatt 682
           ||||||||||||||||||||||
Sbjct: 226 gacttagggatcttaattgatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1086
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1076
Effective search space:   723072
Effective search space used:   723072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)