BAC Information

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BAC

Clone NameMSMg01-174E13
Chromosome8 (Build37)
Map Location 11,090,475 - 11,249,935
singlet/doubletdoublet
Overlap geneCol4a1
Upstream geneMyo16, LOC100040008, LOC384782, LOC100040507, LOC665306, Irs2
Downstream geneCol4a2, Rab20, 0710008K08Rik, Cars2, Ing1, Ankrd10, 1700016D06Rik, EG665271, LOC665363, LOC624710, LOC665373, Arhgef7, 1700018L24Rik, LOC100040155
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174E13.T7 (MSMg01no174_e13.b1)MSMg01-174E13.TJ (MSMg01no174_e13.g1)
ACCAG369626AG369627
length735753
length of high quality
(start - end)
270 (45 - 314)232 (129 - 360)
definitionCHROMAT_FILE: MSMg01no174_e13.b1 PHD_FILE: MSMg01no174_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:07 2005CHROMAT_FILE: MSMg01no174_e13.g1 PHD_FILE: MSMg01no174_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,249,669 - 11,249,935)(11,090,475 - 11,090,590)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGATTTCTTCCTTTCTGTTCCCAGGAGTGTGAGGGGTCACCAGTGA
CATGTGACCAGTCAGCTCAGGATGGGTGTTGAACTTTCTGGACACCATGA
ACATAAGAGGGTCCGATTCCCTGGCTGACATCATGCTGTGGATTCGTTTA
ATATGCTACTGGGAACCAGATTGCTCTAGTGACCCAGATAAAGAAGGGAC
CTGGGGTGGGCTGACTTCATTTCTAATTCTGCTTCAGAGCTGAGTCAGTG
GAAATCTGGTAGGAATCTTTTTATCTGGCTCCCTTCCCCGCCGCGTTCAT
TCCATGTATTATATCGGAAAACAAAAACCTTATCTCTGCTGGTCTTCTGG
AGATACTGCCAATATCAATTAAAAACATAAAAATACTCCGCAGACACACT
AGAAAGTTCTCCGCCAACGTTCCATTTTCGAGTCCTCCCCGGCTCAGGTT
GGGTTATTTGACAATTTCGCATTCCATCTCCATTTTACCTCACTTATTTA
TTTTACTATTATTTTGGCGGCCATCTGTTCACAGTTCGTTTTATACCCCC
TTTGCGCTGTCTTTTTCTTCAGTTTTGAAACCCCACCCACCCCTTTCCTT
TAGTTGTTATAAATTTCCTCATTCCCCCCCGCCCCCACCACCCTTGTTTT
CCCTACGCGCTTAATCCTTTGTCTTCCCTTCTTTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTGCCTTCATGTCAGCATCTGT
CTACTGCATTAAAAAGGTGAGGTCGCACCTGGGTGGGACAGGACACATGC
TTACTTCCTTGTGGATGCCAGGAACAGAAGTATGATGTGAATGAAGACCT
ACCTAGTGAGATGGCCTCTGCTGTGGGCTTAGGTCTCCAGCTCTGGAATA
GAGGAATGCAGAAGGCTTGTCATTTGTTGCAGAGATTACAAGGTGGCTCC
TGCTGAGGGTCTCATCCTGATGTTTTTCAGGAGCCTTGACACCGCTGGCC
TTCAGCTGTTTATTTTGGGGTTGCCCCACGAGCCTCCACCAAGGGATGAG
TACCAGCCACACAGACTGTAACATTCCTGACTCTCCTTGGTGAGAACAAA
GGAGCTAATACCTTCTGGTCCTCTTTCCCCATGACGCAGCTGAATCAGAA
GGAGCAGAACTGTGCCCCACCGGTGCCCGACGCAACAGCCCATGCTGCTT
GCTTTATGGGAAAGATGGCTTGTGGGGCTGTATAGGAGCTGTTTCCAGTT
CAGCCTATCCTGTCCTATTGGCATCTACAGACTCCAGATGTCATGTTCAC
ATTTTGCCAGATGTTGAGATGCCCTGCGATGCGGATGCAGGCTGTGGCCT
GACGTGCCCTGATGATCCTCTGAGTATGTATCTACGAAGGAGAGGATGTT
GAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_e13.b1 MSMg01no174_e13.b1 CHROMAT_FILE:
MSMg01no174_e13.b1 PHD_FILE: MSMg01no174_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:07 2005
         (270 letters)



>mm_chr8_11249466_11250135
          Length = 670

 Score =  509 bits (263), Expect = e-149
 Identities = 266/267 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagatttcttcctttctgttcccaggagtgtgaggggtcaccagtgacatgtga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ggaattcagatttcttcctttctgttcccaggagtgtgaggggtcaccagtgacatgtga 411

                                                                       
Query: 64  ccagtcagctcaggatgggtgttgaactttctggacaccatgaacataagagggtccgat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ccagtcagctcaggatgggtgttgaactttctggacaccatgaacataagagggtccgat 351

                                                                       
Query: 124 tccctggctgacatcatgctgtggattcgtttaatatgctactgggaaccagattgctct 183
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tccccggctgacatcatgctgtggattcgtttaatatgctactgggaaccagattgctct 291

                                                                       
Query: 184 agtgacccagataaagaagggacctggggtgggctgacttcatttctaattctgcttcag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 agtgacccagataaagaagggacctggggtgggctgacttcatttctaattctgcttcag 231

                                      
Query: 244 agctgagtcagtggaaatctggtagga 270
           |||||||||||||||||||||||||||
Sbjct: 230 agctgagtcagtggaaatctggtagga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space:   172521
Effective search space used:   172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no174_e13.g1 MSMg01no174_e13.g1 CHROMAT_FILE:
MSMg01no174_e13.g1 PHD_FILE: MSMg01no174_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:07 2005
         (232 letters)



>mm_chr8_11090161_11090792
          Length = 632

 Score =  194 bits (100), Expect = 5e-54
 Identities = 112/116 (96%)
 Strand = Plus / Plus

                                                                       
Query: 115 ctggaatagaggaatgcagaaggcttgtcatttgttgcagagattacaaggtggctcctg 174
           |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 315 ctggaacagaggaatgcagaaggcttgtcatttgttgaagagattacaaggtggctcctg 374

                                                                   
Query: 175 ctgagggtctcatcctgatgtttttcaggagccttgacaccgctggccttcagctg 230
           |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 375 ctgagggtctcatcctgaggtttttcaggagccttgacacagctggccttcagctg 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)