BAC Information

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BAC

Clone NameMSMg01-174K24
Chromosome8 (Build37)
Map Location 37,858,823 - 37,883,482
singlet/doubletdoublet
Overlap genenone
Upstream geneGm501, Cldn23, LOC671641, D8Ertd82e, Lonrf1, EG544878, 6430573F11Rik, Dlc1, LOC100042892
Downstream geneA730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121, LOC621149, Sgcz
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174K24.T7 (MSMg01no174_k24.b1)MSMg01-174K24.TJ (MSMg01no174_k24.g1)
ACCAG369913AG369914
length745748
length of high quality
(start - end)
239 (130 - 368)295 (78 - 372)
definitionCHROMAT_FILE: MSMg01no174_k24.b1 PHD_FILE: MSMg01no174_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:37 2005CHROMAT_FILE: MSMg01no174_k24.g1 PHD_FILE: MSMg01no174_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,883,244 - 37,883,482)(37,858,823 - 37,859,117)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCGCATTAATTTACTCCTCACCTCTCCCGGGCTTTTAGTATAATAGA
AAGGGGGATGTTTTTTCAGAATAAGAGCTAGGGTCAATTTCTACTTCAGT
TTTATGATCTGGGGAGAATTAATTACCTGAGTGTCAGCGCATTAATCCGT
CAAGTAGGGGTAATTGTATACTAGGTAGCTTCAAGGTTCGCAAGAAGTCC
GAAGACTAAATGTAAATGCTTAGCATTCCTTTTGTGGATGACAGGCTGAG
TTCTTACAGCACTTGCTTAGAGAACACAGTGCAGAAGCAGTCAGGAAACA
AGGGCACTGCCCTCAGGGATTTTTGTATACCACGCAGCCAATCCCCTAAC
TACAAAGAAACTCTAAGGAAAACATCAAGTTGCAGGTTAGCTGTGTGGGT
TGTCATTGTAGATTTTAACAAAATTAGGACTTAGAATTGACTATAAGATG
GTCTGTTTGATGTTTAGGTTCTACATAAATGTACAGGTTTACCATCATGG
TTGAGTCCAACACTAATCCCATGCCTTGAGTAGTGTGGGGCTGGTTTGCA
TAGTGCTGAATAAAGGACACCAGGCCTCATGAAAAGAGAAAAACAGAAGT
ACCTACTGGAGAAAGTAGACATGAGCTAGCTAAATGTATGATAGGACAAT
TTACAAAGGCCTCTCTGGGACCTTGGAATGCTTATCTGATGAGAA
TCGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTAATAGAAAGTCAAGGAACTGGG
CTGCCATGGTGAGACTCCAGTGGGTAAAATGGGCTGGTTCATCTTCCTAG
TATGCTCTGAGTGATGCAGGATTCTTGTAAATATCAGGTGGCTCTGAGAG
TGGAGCTTTAGGGAAGAAAAACCCATCCAGGACAGCCAATAGCAAGCTGA
TGAGAAGCAAAGGATGGAAAGCCATCCACCAACATCTCTACTCTAGTGTT
AAGGTGAAACCAAGGTACACCATCAGATGGATAGCCATTGAATAAGTATA
AAGAACTAATTAAGATATTTCTCATTACTCTGCCCCCTATGCATTACAGG
TTAAGTGTTCCTTATCTAAAATGTTTAGGACCTAATGGTTTAAATTTTAA
ATATACATACATATTTAATCATTGATATATATATATATATATATATACAT
ACACACACACACATATATATATATACAGATACACACACACACACTCACAC
ATGTATAGACACATGTGTGTATTTATAGACACATATACTTCATTTAATAC
TGAAATAAGCCTTTTAGGAGAATACATTTGCAATATTTCAATTAAGTCAC
TTTCTTTGACACTGCTAATTCCCAGGTTAAAAAAAATTTTCAAATCTGGG
AAGGTCTATACATAATTAATGAGCTAANAATAAATGAAACAACAGAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_k24.b1 MSMg01no174_k24.b1 CHROMAT_FILE:
MSMg01no174_k24.b1 PHD_FILE: MSMg01no174_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:37 2005
         (239 letters)



>mm_chr8_37883044_37883682
          Length = 639

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggtcaatttctacttcagttttatgatctggggagaattaattacctgagtgtcagcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 agggtcaatttctacttcagttttatgatctggggagaattaattacctgagtgtcagcg 380

                                                                       
Query: 61  cattaatccgtcaagtaggggtaattgtatactaggtagcttcaaggttcgcaagaagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cattaatccgtcaagtaggggtaattgtatactaggtagcttcaaggttcgcaagaagtc 320

                                                                       
Query: 121 cgaagactaaatgtaaatgcttagcattccttttgtggatgacaggctgagttcttacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cgaagactaaatgtaaatgcttagcattccttttgtggatgacaggctgagttcttacag 260

                                                                      
Query: 181 cacttgcttagagaacacagtgcagaagcagtcaggaaacaagggcactgccctcaggg 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cacttgcttagagaacacagtgcagaagcagtcaggaaacaagggcactgccctcaggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no174_k24.g1 MSMg01no174_k24.g1 CHROMAT_FILE:
MSMg01no174_k24.g1 PHD_FILE: MSMg01no174_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:37 2005
         (295 letters)



>mm_chr8_37858623_37859317
          Length = 695

 Score =  571 bits (295), Expect = e-167
 Identities = 295/295 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taatagaaagtcaaggaactgggctgccatggtgagactccagtgggtaaaatgggctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taatagaaagtcaaggaactgggctgccatggtgagactccagtgggtaaaatgggctgg 260

                                                                       
Query: 61  ttcatcttcctagtatgctctgagtgatgcaggattcttgtaaatatcaggtggctctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcatcttcctagtatgctctgagtgatgcaggattcttgtaaatatcaggtggctctga 320

                                                                       
Query: 121 gagtggagctttagggaagaaaaacccatccaggacagccaatagcaagctgatgagaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagtggagctttagggaagaaaaacccatccaggacagccaatagcaagctgatgagaag 380

                                                                       
Query: 181 caaaggatggaaagccatccaccaacatctctactctagtgttaaggtgaaaccaaggta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaaggatggaaagccatccaccaacatctctactctagtgttaaggtgaaaccaaggta 440

                                                                  
Query: 241 caccatcagatggatagccattgaataagtataaagaactaattaagatatttct 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caccatcagatggatagccattgaataagtataaagaactaattaagatatttct 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)