BAC Information

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BAC

Clone NameMSMg01-175H02
Chromosome8 (Build37)
Map Location 48,724,125 - 48,724,346
singlet/doubletsinglet
Overlap geneLOC667422
Upstream geneIrf2, Enpp6, Stox2, 4930448N21Rik, D030016E14Rik, Rwdd4a, LOC384819
Downstream geneIng2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2, LOC100040113, Dctd, Odz3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175H02.T7 (MSMg01no175_h02.b1)MSMg01-175H02.TJ (MSMg01no175_h02.g1)
ACCAG370430AG370431
length788774
length of high quality
(start - end)
221 (128 - 348)49 (82 - 130)
definitionCHROMAT_FILE: MSMg01no175_h02.b1 PHD_FILE: MSMg01no175_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:31 2005CHROMAT_FILE: MSMg01no175_h02.g1 PHD_FILE: MSMg01no175_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAAAAAAAAAAAAAAAANAATTCTTATCCTTTATACCCCCCCCCCCCT
ATCCCCCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAGA
GGACCCGCGGAATTCAGTGTTTCCCTCCACCCTCCAAGGGTACCTGTACT
TATGTGCACATACTTACACATAATTGTATACACATGTACATAATTAAAGT
ATTTTAAAAATATCTATAAAAAGCACAGACTATATGAATTTTCTCTAATA
CATGAGTCACACTCTGGGCATGGTAGTGCGTTCCTTTAATCCCAGTCCTC
AGGAGGTGTGGTAGGCAGATCTCTGAATTCCAGGTTGGTGTACAAAGCAA
GTTCAATGGCTAAAAACTGAGGAGGACATATATCAGACATCAGGCATCTA
TAGCCAAGCCCAGGTTTTTTTTTTTACCTAACCACTTATTGTTAGCTTTG
CGTCTTCCCATGATTCCTTGCTCCCATCAATAAGAGATACCGACACACTC
ATAACACCAGCTCCTTATGTTCTTCTAGCTGGCCTGCCTTGTCTGGCCTC
AGTGGGAGAGGAAGCACCTAGCCTCCAAGAGACCTGAAGTACCACCGTTC
CCGCATGCCAAGGTTGCCCCCGTCCCGCTCTGACGAGAAGAGGACGCCTG
TAGCACTCAACGATTGTACCAGCCACTGATCAGTCATCGTCTTAATATAT
CACCAACACCCCCTTTCACTTTACTCATTTCCCACCACTACCCCCTTCTC
TCTCTTTGCTCACACACAATATTCCTTGCCTACCTCTG
CCTTTCTATCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAACCAGGGCTATA
CAGAGAAATCCTGTCTCAAAAACAAAAACAAAAAACCAACAACAACAACA
ACAAAAAGGACACTAATTGGGGATGACTTACAAATTTAGCATTTCAGTCC
ATTGTCATCATGGTGAGAAGCATGGCAGCATGCAGGCAGGCATGGTGCTG
GACAAGGAGTTGAGAGTTCCACATCTGGGTCTTCAGGCAGCAGGAAGAGA
CTCTGAAACCTCAAAGTCTGCCTCGAAGTGATAGACTTTGACAAGGCCAC
ACCTCCTAACAGTGCTGCTTTTTTGTGGACCCGCGCCACCATTTTCATTC
AAACCACCATCTCTGGAAGACAACCCAGAACAACCGCAATAGCCTATGCT
CTGGGAGTCTCTTGGACATCCCTGACCAACAACTCACAAGAGGGCTTCCC
CGCCCGCTGCTGGGACCCCCGCCAACCGTCCCTTGCACGACCCCCTCCCC
CCCCCCACCATGGCCAATTTTCTTTTCCACCTCCCCCCGCCCCACCCTAC
TATCAACATTTAACCCCACCCCCCGCCCACTTTACCCGTTCCCCCCTTCC
CACCACCCCACCGCCTAACCTACCATCACCGCCCCATTTCAACCCACACC
GCGCACTATTTTAATCCCCCCAACCTTTGCGCCCCTCGCCCGCTCCCCTC
CTACCACACCCCCAACCTCTCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_h02.b1 MSMg01no175_h02.b1 CHROMAT_FILE:
MSMg01no175_h02.b1 PHD_FILE: MSMg01no175_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:31 2005
         (221 letters)



>mm_chr8_48724014_48724635
          Length = 622

 Score =  406 bits (210), Expect = e-118
 Identities = 219/222 (98%), Gaps = 1/222 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caccctccaagggtacctgtacttatgtgcacatacttacacataattgtatacacatgt 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 333 caccctccaagggtacctgtacttatgtgcaaatacttacacataattgtatacacatgt 274

                                                                       
Query: 61  acataattaaagta-ttttaaaaatatctataaaaagcacagactatatgaattttctct 119
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 acataattaaagtatttttaaaaatatctataaaaagcacagactatatgaattttctct 214

                                                                       
Query: 120 aatacatgagtcacactctgggcatggtagtgcgttcctttaatcccagtcctcaggagg 179
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 aatacatgagtcaaactctgggcatggtagtgcgttcctttaatcccagtcctcaggagg 154

                                                     
Query: 180 tgtggtaggcagatctctgaattccaggttggtgtacaaagc 221
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 tgtggtaggcagatctctgaattccaggttggtgtacaaagc 112


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 622
Length adjustment: 9
Effective length of query: 212
Effective length of database: 613
Effective search space:   129956
Effective search space used:   129956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)