BAC Information

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BAC

Clone NameMSMg01-175K06
Chromosome8 (Build37)
Map Location 81,224,257 - 81,224,489
singlet/doubletsinglet
Overlap geneSlc10a7
Upstream geneEdnra, EG622803, Ttc29, Pou4f2, LOC100039422, Rbmxrt, LOC100039466
Downstream geneLsm6, EG666340, EG666346, D630040G17Rik, 1700011L22Rik, Mmaa, A630049P17, Smad1, LOC666378, LOC666388, LOC666392, Otud4, Tpd52-ps, Abce1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175K06.T7 (MSMg01no175_k06.b1)MSMg01-175K06.TJ (MSMg01no175_k06.g1)
ACCAG370570AG370571
length734865
length of high quality
(start - end)
233 (122 - 354)225 (70 - 294)
definitionCHROMAT_FILE: MSMg01no175_k06.b1 PHD_FILE: MSMg01no175_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:45 2005CHROMAT_FILE: MSMg01no175_k06.g1 PHD_FILE: MSMg01no175_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACTCAGTTCTCTTAATTAAGCCTGGGAAACGAGAAAGATGTCAGAGTGCA
TGTCTCAAAAAATAGACCCGATTCTAGCCCTGCATGACTTTACAAGTAAA
TATGTGATCTCTGAGGGCTACACTCAGACACCCTGTGTTCAGGCGCACTG
CCAAAGAGTGGTGGAGTTGGCTTCATGGAAGAGACAGTCAACAAGAATGG
CTGTCTTGTGAGAAGCAGCAATGATACATATGTTAGCACACATACATAGC
AGGATATGGTGGGCTTCGGCAGAGGAAGACCCAGACAGGCACTAGTTGTG
AAGAGGAATACTGGATCAGGTTCCAGGCCCATGGGCTGTAGGTGTTCGCA
GTGAGTTCTCCCCCACCGAGGTCTGATCTCATATGAAACTCACATTCCGC
CACCACGTTTGTGAGAGGCGAGGTCGGGCCTCACACCAGGTTCTTGGCTT
TGGAGCATTGAGTTTAGCTGATTGTTCAGAGTCAGTAAAAAACACACTTA
ATTGATTGCTATAATCTGAAGCATTTTTCTAAATTTGTAGGTATGCTTTT
ATGAAGTAAGAATAAATCCTAGAGCAACTATGTCATACAGAAAACTGTGT
GTGCTCGTTCCTTGTGGCAAGGTAGTTTTTCTAACTATCCGACCTTGTCT
GTGACCTACTTTGTAAAAGTCCCCCTAAGTACCG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAATGAAAATAAAGGCACAGCATACCCAAATT
TATGAGACACATTGAAACCAGTGCTAAGAGGAAAGTTCATAGCACTAAGT
GCCTCCATAAAGAAATTAGAAAGTTCCAATATCAGCAATTTAAAAGTACA
ACGGAAAGCTCTAGAAAAGAAGAAGAGGAAGAGGAAGAGGAAGAGGAAGA
GGAAGAGGAAGAGGAAGAGGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAG
ACCACTATGAACATTTTTTTTTTCACGAATACCCATTATTCACATAAAAC
CACATTTTTTTTTTTTTACCCCCCCCCCCCCCCCCAAAATTTATAGTTTG
TTATAATTTAAGATTTTTCTCCCCCCCCCAAAAAAAAAAAATAAATAAAC
CCTTGTGCGGTGGGGTTTTTTGATTTACTTCGCCTCCGCTTACACTTAAT
CCCCTTATTATTTATTCTACACTCCACATGACCTCAGCATCTACTATGCC
CATCTCCTCTTCCCCCAACTCCATTACGTTTTTACCGGCCTCATTTCCAT
TATCATTTTCGATCTCCTGTATCTTCTTTTCTCATAACACAAATCATCGT
TTAATTTCACCTTTCCTATTTGTCTGTATTTTCTTTGTATTACAAAATAT
GTACTTATTTAATTTGTATGTGTACTATCTAGTCTCCACCCCTCCTTCCG
TTCTCTTACTCTCTATTCATCTTGTATCTCCCTGCTTGTCCCTCTTGTAT
TTAGCCTCTACCCATTCCTCCTCGCTGCCCTTCGCCTCTCTTATACATGT
TTAGTTTCATATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_k06.b1 MSMg01no175_k06.b1 CHROMAT_FILE:
MSMg01no175_k06.b1 PHD_FILE: MSMg01no175_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:45 2005
         (233 letters)



>mm_chr8_81224057_81224689
          Length = 633

 Score =  451 bits (233), Expect = e-131
 Identities = 233/233 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctagccctgcatgactttacaagtaaatatgtgatctctgagggctacactcagacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctagccctgcatgactttacaagtaaatatgtgatctctgagggctacactcagacac 260

                                                                       
Query: 61  cctgtgttcaggcgcactgccaaagagtggtggagttggcttcatggaagagacagtcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgtgttcaggcgcactgccaaagagtggtggagttggcttcatggaagagacagtcaa 320

                                                                       
Query: 121 caagaatggctgtcttgtgagaagcagcaatgatacatatgttagcacacatacatagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagaatggctgtcttgtgagaagcagcaatgatacatatgttagcacacatacatagca 380

                                                                
Query: 181 ggatatggtgggcttcggcagaggaagacccagacaggcactagttgtgaaga 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggatatggtgggcttcggcagaggaagacccagacaggcactagttgtgaaga 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)