BAC Information

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BAC

Clone NameMSMg01-175L08
Chromosome8 (Build37)
Map Location 92,276,847 - 92,277,136
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC675985, Sall1, LOC100041089, EG625801, EG384862
Downstream geneTox3, LOC100041133
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175L08.T7 (MSMg01no175_l08.b1)MSMg01-175L08.TJ (MSMg01no175_l08.g1)
ACCAG370618AG370619
length726864
length of high quality
(start - end)
294 (44 - 337)---
definitionCHROMAT_FILE: MSMg01no175_l08.b1 PHD_FILE: MSMg01no175_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:51 2005CHROMAT_FILE: MSMg01no175_l08.g1 PHD_FILE: MSMg01no175_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCACTATCGGGAGAGGATCCGCGGAATTCCATCACTCCTCCAGGGTAAG
AAGAGCTTGATGGAGTTTAAAGAAAGAGCCTTTGCTGTCGTGACAGTATC
CAATCACGATCTCTCCATTTACACGGAGAAGTGCAATACAGCCAAGCGAG
AAGGTTTTATATTAACTTTGGGGAAAGGATGGAAGAATGTGAAATAGCTT
TGCTGTCTGAGGCTGTCCAGGTGTGAGCTCTGTGGCTACGGTATTGTGTT
TTAGGTTTTTTATTTCATTGCGCTTGCAATGACGTTAGCAAAGGGTTTTC
GTTTGTTTGCTTGCTCATTAGTCCATTCCTGTCTTTTGTTTTCGCCCCCG
CCGCTGTTTTGTGGTTTGTTTTTGTTTGATTATGTTTCCCCCCCAAAAAA
AAAAAAAATCCTTTGGTGGGGGCCCCCCCCTCTCCCTGCCCCCTTCCCCC
TTCCCGCCTCTCCCCCCTTCTTCCCTTTAACCCCCTCCCCTACTATATAT
TATTTTCTTCTCCCTCACTCCCCTCGACATGACCCACCTTCCTCTCCTCT
TCACTCCTTACTTCTCTTATTCCCTCCCCCCCTATCCCCTTACCCTTCCT
TCTCTTCTTACCCCCACCCTCTATCTTCTCACCCCCCCCTCCTCTTCTCC
CCTACTTTTACGTAACCGCCTTCTTCCCCCCCCTCCCCCTTATCCCTCCC
CTCCTTCTTCTCTCCTCTTTTTCCTG
CCTTCCCCAACGTACAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAATCCCACAGGCCACCTG
AGGCTCAGGGGGACCCTACAGAACCAAGGGGGAAGAATCCCGGCCGTTAT
AAAATTAGGGCGGGGGGGCCTAGTACGTTGCCAGCGCCACCCATCTCTCG
CCCCCCTGATTCTCCCTTCCCCCCCATCTTCCCCCCTCCCCTCCCCCCTT
CCCCCCCCCTACCCTTTAGGATCTCCCCCCTCCCACCCCTTCCCTCCCCC
CCCCCTCCTCTCTCCCGCCCCCCTCCCTTCACACCTCCTCCCCCCCACCG
CCCCCATAACCAAATTTTTTTTATTTTCCCCCCCCCCCCCCCCCCGCCTT
GATTTTTTTGGAATAATGGATCAAACGCCTCCCCCCTCTTCCAAAAAAAA
CCAAAACCCCCCCCCCCCCCGCCCCCCCTCCCTATCCCCCACCATAGCTA
ACAACCCCCACCCCCCACCCCCCCCCCCCCCCACCCTCTCCCCCTCCCTC
TCCCCCCCCCCCCACTGCCCCACCTCCCCCCACTCACCCCGACCCCCTCC
CCAACCACACTTACCCCTCCCACTCCCATCTCCTCTACTCCCCCCCCCCT
CATCCCTACTTCCCATCACAAATCGCTCACCCCTCCCTCACCTCTTCACC
CTACCCCCATCTTACCTCCCCTCTCCCTCCCCTCCCCACACCTCCTTCTC
CCCATTTCCCCTCCTACCCCCCCACCTTCTGCCACCTCCCCCCCCCGTCC
CTCCCACTACTCCTCCCCTCCCCTTCCCCTCCCATCCTACCCCCACCCCA
TCACACTCTTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_l08.b1 MSMg01no175_l08.b1 CHROMAT_FILE:
MSMg01no175_l08.b1 PHD_FILE: MSMg01no175_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:51 2005
         (294 letters)



>mm_chr8_92276647_92277340
          Length = 694

 Score =  561 bits (290), Expect = e-164
 Identities = 290/290 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggtaagaagagcttgatggagtttaaagaaagagcctttgctgtcgtgacagtatccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gggtaagaagagcttgatggagtttaaagaaagagcctttgctgtcgtgacagtatccaa 431

                                                                       
Query: 61  tcacgatctctccatttacacggagaagtgcaatacagccaagcgagaaggttttatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tcacgatctctccatttacacggagaagtgcaatacagccaagcgagaaggttttatatt 371

                                                                       
Query: 121 aactttggggaaaggatggaagaatgtgaaatagctttgctgtctgaggctgtccaggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aactttggggaaaggatggaagaatgtgaaatagctttgctgtctgaggctgtccaggtg 311

                                                                       
Query: 181 tgagctctgtggctacggtattgtgttttaggttttttatttcattgcgcttgcaatgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tgagctctgtggctacggtattgtgttttaggttttttatttcattgcgcttgcaatgac 251

                                                             
Query: 241 gttagcaaagggttttcgtttgtttgcttgctcattagtccattcctgtc 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gttagcaaagggttttcgtttgtttgcttgctcattagtccattcctgtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)