BAC Information

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BAC

Clone NameMSMg01-176A14
Chromosome8 (Build37)
Map Location 10,223,240 - 10,223,765
singlet/doubletsinglet
Overlap geneMyo16
Upstream geneTmem28, Lig4, Abhd13, Tnfsf13b
Downstream geneLOC100040008, LOC384782, LOC100040507, LOC665306, Irs2, Col4a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176A14.T7 (MSMg01no176_a14.b1)MSMg01-176A14.TJ (MSMg01no176_a14.g1)
ACCAG370854AG370855
length1,2501,263
length of high quality
(start - end)
319 (79 - 397)527 (130 - 656)
definitionCHROMAT_FILE: MSMg01no176_a14.b1 PHD_FILE: MSMg01no176_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:17 2005CHROMAT_FILE: MSMg01no176_a14.g1 PHD_FILE: MSMg01no176_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNAAACATTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAAT
TCTGTTGCTGATGCTCGCACCTATAAATCCTGATTTCTTTCCTAGGGTTT
CTATCTCCACCTTTGTCTCCCTTTGGGTTCTCTTCATTGTTTCTACTTCC
ATTTTTAGATCTTGGATGGTTTTGTTCAGTTCCACCACCTGTTTGGTTGT
GTTTTCCTGTAGTTCTTTAAGGGGTTTTTGTGTTTCCTCTTTAAGGACTT
CTACCTGTTTAGCAGTGTTTTCCTGTAATTCTTTAAGGGCTTCTACCTAT
TTAGCAGTGTTCTCCTGTATTTCATTATTTGAGTTATTAATGCCCTTCTT
AAAATCTTCTCCCACCATCATGAGATATGATTTTAAATCTGAGTCTTGTT
TTTTTTTTATGCAGGGGCATCCAGGACTTGTTTGTGGTTTGTGTACCGCC
CTTTTTTTTTCCCCACCCTCCTTGTTTCCTTTTTTTATTAAAATAATTGT
TTTTTTCTGTCTTCTGTTTATTCCTGTATTCTATGTTTCTCTTTTTTCTG
TTTCTTTTTTTTTTTTCTTTCTATTTTCTTTTTTTTCTTTTTTCTCTATT
TTCATTTTTTTCTTTTTTATTCTCACTTTCTTCTTTTCTACTTTTTTTAT
TTTTTTCTTTCTTTTCTTTATTTTTTTTAGTTTTTTTTTTTCTTTCTTCT
TTTTTTTTTTTCTCCTTTTTCTTTTCTTCTTTTTTTCTTCTCTTATTTTT
TTTTTTTATCTTTCTTCTTGCATTATTTTTTTTTTTTTTTTTTTTTCATT
ATTTTCTTTTTTTTTCTCTTTTTTTCCTTTTTCTTTTCTTTCTTTTATCT
TTTTTTATTTTTTTATTTCTTCTTTTTTTTCTTTTCATATCTTTTTTCTT
TCTTATCTCTTCTTTTTCATTCTTTTTTTTTTTTTTTCTCTCTTCTTTTT
TTTTTCTTCTTTTTGTTCTTTTTCTTCTTCTCTCTTTTTTTTTATTCCTT
TTTTTTATTTTATTTTTTTTTTCCTTTCTTATTTTCTTCTCCTATTTTAT
TTCTTTTCATCTTTCTCCTTTCTAATTTACTTTCTTCACTCTTCTTTCAT
GTTTCTTTCTCCTTTTTTTTTTTCTTTATCTTTTCCTTCTTCTTTTCTCT
ATTTTCTTCTTTTACTCTAAATCTCTCTCCTCTCTCTTTTATAATATTTC
TTCTCAATCCTTTTTCTTTTTTCTTATTTTTTTATTCTCTCTTTTCTTTC

TTTTTTGCGCAGTGAGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCCCTTAAAACCTCCAGGAAGCACATGATTTT
TTTTTCTTTCCTGCCATTGAGTAGGATCCGAGCTCATTCCATTCCCTCTC
ACATTCCAGGCACGTTTACTAAACACCAGCCCTGTGCCTGCTGCTATTCT
CTGCATGGTCCAAGCCCATCTTAAACATTACAAGACCATGGCCTGAGACT
GGTACTGGAATGAGGGCACCTCTTTTCCCACACAGCTATGGACTAGAAAT
ACCTACACAGAAGGCAAAGGAATCCAGGCAGTTTGCTTCAATCTTTCAAT
TGTTCAGACACAGGCTTCCTGTGAGGGTCTGAAAGCAGAACACCATGCAA
CTTTTTGTTTCATGAGCTAATGTTATAGAGTAAGGTGGGTGAGCCCCTTT
GAGCTGCATAAGAAATCCACATACATCCTTAGCACTGCTGACTTTCCTGG
ATGTAGGAAGTCTAGTCACAGTTAAAGGTCACCTTCAAAACCAATGAGAA
GGCAACAAAAAGCCTCAAACTACCAGTAGAGTGAAGGGGTCTTAAAAATA
CATTTTCCTCCTGTGTGGAGAAAATCCAATTTTGGTTTGCTTTATCAATT
TTGAAATTGAGTTTTTAAGATAATGGTAACATTGAAATCTTTTCAGACCA
GGGACTGCATATAAGAATTTCTCCAGTCTCGTGTTAATCATTACAGAATC
CAGTATAAGGTAATATATTTATTCCTTATCTGCTTGCTTTATAACCACTA
GAATGAAAAACTTTTGTTTCCTATCATCCTTCACGTTTTCCACTAGCTCC
GGCAATTCCCGTTCCTATCACATTGTTATCTTGCTTTTTCCCTCCTCTTT
CATTTTCTAGTTTTTTCATTTCTTATTCCTCCTTTCTCCCTTACCCCTAA
TTTTTTCTTTCTTTCCTTTTTTTTATTTTCTATCCCTCTTTTTTCCATTC
TCTCTTATTACTCTTCTTTTTTTTATTTTTTTCCTCTTTTATCATCTCTT
TTCTTCTTTTTTTCTTCTATTCTTCTACCTTTTTCATTTCTTCCTCCTCT
CTCTTTCCCTCTCTAATCTCTTCTCTTCTCTTCATTCTATTTACTATATT
TTTATTCTTATACTTTCGTCTCTTCCCAATTTTATTCTATCTTTCTCATC
CTTTTCCGTTACTTCCCTCCTATTCTTATCCACTAACTCTATTTACTATC
ATTCCATATTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_a14.g1 MSMg01no176_a14.g1 CHROMAT_FILE:
MSMg01no176_a14.g1 PHD_FILE: MSMg01no176_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:17 2005
         (527 letters)



>mm_chr8_10223040_10223965
          Length = 926

 Score =  930 bits (481), Expect = 0.0
 Identities = 516/533 (96%), Gaps = 13/533 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagctcattccattccctctcacattccaggcacgtttactaaacaccagccctgtgcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 gagctcattccattccctctcacattccaggcacgtttactaaacaccagccctgtgcct 667

                                                                       
Query: 61  gctgctattctctgcatggtccaagcccatcttaaacattacaagaccatggcctgagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gctgctattctctgcatggtccaagcccatcttaaacattacaagaccatggcctgagac 607

                                                                       
Query: 121 tggtactggaatgagggcacctcttttcccacacagctatggactagaaatacctacaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tggtactggaatgagggcacctcttttcccacacagctatggactagaaatacctacaca 547

                                                                       
Query: 181 gaaggcaaaggaatccaggcagtttgcttcaatctttcaattgttcagacacaggcttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaaggcaaaggaatccaggcagtttgcttcaatctttcaattgttcagacacaggcttcc 487

                                                                       
Query: 241 tgtgagggtctgaaagcagaacaccatgcaac-----tttttgtttcatgagctaatgtt 295
           ||||||||||||||||||||||||||||||||          ||||||||||||||||||
Sbjct: 486 tgtgagggtctgaaagcagaacaccatgcaacaagca-----gtttcatgagctaatgtt 432

                                                                       
Query: 296 atagagtaaggtgggtgagcccctttgagctgcataagaaatccacatacatccttagca 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 atagagtaaggtgggtgagcccctttgagctgcataagaaatccacatacatccttagca 372

                                                                       
Query: 356 ctgctgactttcctggatgtaggaagtctagtcacagttaaaggtcaccttcaaaaccaa 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ctgctgactttcctggatgtaggaagtctagtcacagttaaaggtcaccttcaaaaccaa 312

                                                                       
Query: 416 tgagaaggcaacaaaaagcctcaaactaccagtagagtgaaggggtcttaaaaatacatt 475
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 311 tgagaaggcaacaaaaagcctcaaactaccagtaaagtgaaggggtcttaaaaatacatt 252

                                                                
Query: 476 ttcctcctgtgtg-gagaaaatccaattttggtttgctttatcaattttgaaa 527
           ||||||||||| | |||||||| | |||||||||||| ||||||| |||||||
Sbjct: 251 ttcctcctgtg-gagagaaaattctattttggtttgccttatcaa-tttgaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 926
Length adjustment: 10
Effective length of query: 517
Effective length of database: 916
Effective search space:   473572
Effective search space used:   473572
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)