BAC Information

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BAC

Clone NameMSMg01-176F12
Chromosome8 (Build37)
Map Location 118,976,621 - 118,976,889
singlet/doubletsinglet
Overlap geneLOC384868
Upstream geneMaf
Downstream geneLOC668233, Dynlrb2, Cdyl2, LOC100043053, 2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2, Bcmo1, Gan, 4933407C03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176F12.T7 (MSMg01no176_f12.b1)MSMg01-176F12.TJ (MSMg01no176_f12.g1)
ACCAG371068AG371069
length1,2921,291
length of high quality
(start - end)
322 (126 - 447)269 (130 - 398)
definitionCHROMAT_FILE: MSMg01no176_f12.b1 PHD_FILE: MSMg01no176_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:59 2005CHROMAT_FILE: MSMg01no176_f12.g1 PHD_FILE: MSMg01no176_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGACTATGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTC
ATTGGCCCATCCTGCATTTTATATGGACCTTTTAGTACACCATGCACTGG
TCATTTGGCAAATACGGGCTTCTCATATCATAGGAATACTTTTCAAGTCA
TTCCACATTGCATTAATATCTATTTTTTTAATCTGTTAATGCCACCAGTC
TCATCTCCCAAATATTTGAGTTTTCAAAAGCGATGGTGCTCCCAGTTGCA
AAATATAAAATTTCCCAAAATTCGACTTGTCTCTTGAAGGTTGGGCTCTC
ACCATGGGCAACGGATGGCATCAGTTGTTTTCCTGAAATGACGGGCTCGT
TTATTCTTTTCCCAGAAACTGTCTGCCAAACACCCAAGTCTGAAGAGTTT
TTTTTTGTCTGTCAGTTGCTCTTCCAAGTGAAAATGGTGTTCCGTAAATT
TTTTTTTTTTCCCCCCCCCCAGNTCAGCCACACCCTAACAAAAAAAAAGA
GGCCAGTCACCACGCTACACTCTGCACAGGAGAGTTTTCTGTATGTGTTC
ATCTTATCGGATCTCAAATATTAAAAGATGTGAACACAGAGGTTGAGATT
TGATGGCATTTATCATTGTTACTACTTCATCCAGGGCGTTCTAAAGAGCG
ATTGCTTCTGTTTCTTTTTCTTTTTAATTGTGATCTTGGCATGCTTGAAT
GACAAGGTACCTGTTTATATGCTTGTCCACAGCTGCTGCTAAGCCTTATG
AGTTACCATCAGGGTGACTCACTGTGTCTTTTGTACTATCAAAGTATCAG
CTATGAGCTGCTGACATATTCAACCACATCTTTATTTGCTAAAAAAAAAA
TAAAAATTTGTACCTCAAAAGACCCCTGAAATAATCCTATGAACCTTTTA
AATGGTTTATGTATCCCCTTTATTTAATTCTCATAAACTGTCATTATTCT
CCATCTCACCCGATGTTGATTTCGTTTTATTATTCCTATTTGCTTCCGGA
TTTGTTTTATCTCTTTAACAAACTATATTTTTGTTCATATATTTACTCTC
TCCTATATTATTTAATTTTTATTTCTAAAATTGAATCTTAATCTCTTCTC
TCTCCCTTTATTGTCCTTGCTCTACTCTTTATTTCTTTTTCTCCTTTCTT
AAATATTTTTTTTATTTTCTATCTCACTTTCTATATCTTTATTTTCTCAT
TCTCTATCTCTATTTATTATCTTATTATATCTTACTTTTTTCTCCTATAT
TTTTTTAATTCTTCTCTATCTGTACTATTTCATTTCAATCCA
TTTTTCCTCATGGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCCCTAAGACCCCCTTCCTGTTGAGAGGTGGCAT
CTCTGAGCCTTTAAACATTCCGGTGCTGNATGAGAATGCAGCAGTAGCAG
TGTGCTGGTTTTTGTTTCTAGTCTCTTGAATCACCTCTCCCAGGAGCTCA
AGTCTCCTCCCCGTGGACAGGCCAGAAAAGAGGGGTTCCTCACCGACTGG
TCCACCTTTCCAGTGACTCTCCAGACAAGAGAATGAAGAGAATGTATTGG
TGGTAGATCTCTCAGGCCCAGCTGCCCCCACCAAAAGCCACATGTGTCAT
ATACAAACTGTCTAGCTGAGCCCCTTTCAGATTTTCAGTCAAACAAAACG
TTTTATTAAAATGATTATCTGAAGCTCTGAATTGTTTGGGACACTTGCTT
ACCCATCAGATGCCCACTGATGACCTATCTGCCAGGTATGGGTCCTCTCT
GGATTCAAGTGCTGGCTCTGAAACCAGACTCCCTGGGTTTGAATCTTTCC
TTGACGACTTAGAAGACACATGACCAGACAACATACTTGTAATCTCTCTA
AATATAGTACGGAGTAGCAGGAAGAACTAAGCATCTTGATTTAGGTGATG
GGTAAATTCCTTAAATCAGTTCTCAGTGTTCTAACCAAGAACTTCTGAAG
ACCTACTGTGTGCCAAGTATCAGGCTACAGAGAAATGTCTATAATATTGG
CAAAATAAGCCTCCCTCTCAGGGAGCTACTTTCCAGTTATTCTCTCCATA
TATTAATTTTGAAATGTTTTCAAATCCTTTTATAAGATCACGTGTGTGTG
TGTGTGTTTTTTTACTCTTTTTTTCCTTCTCTTCCTCTCTACTTTCCTAT
CCTTTTTTTCTTTTTCTCCCTTTTTTCTTCTTCTATTTTATCTTTTTGTC
TTCTTTCCACTCTTTCCTCTCTCTCTCTCCTTTCTCTCTCTTTTCTTTTT
CTTTATCTTTTCTTCACTCCTCCTTCTTCTTTCTCTTTTTCCCTTTCTCA
CTCCTTCTTCTTTTTCTATTTCTCTCTTTTTTTCCTCTTTTCTTTTATCT
TTTTTTTCCTCTCTCTTCTCTTGCTCTATCATCTTTCTATCTTCTTCCAC
TCTTCTTTCCTATTATGTCTCTCCCCCTCCTTCCTCTATCTCTCCTCTCT
CTCTTTCTTTCGCTATCCCCTCTGATCTCTATCTTCCCTCTTCTTTTTTA
CTCCTCCCTCTGTCTTTGTCCTTTCTCTGTTTCATCTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_f12.g1 MSMg01no176_f12.g1 CHROMAT_FILE:
MSMg01no176_f12.g1 PHD_FILE: MSMg01no176_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:59 2005
         (269 letters)



>mm_chr8_118976421_118977089
          Length = 669

 Score =  497 bits (257), Expect = e-145
 Identities = 266/269 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgagaatgcagcagtagcagtgtgctggtttttgtttctagtctcttgaatcacctctc 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 469 atgagaatgcagcagtagcagtgtgctggtttctgtttctagtctcttgaatcacctctc 410

                                                                       
Query: 61  ccaggagctcaagtctcctccccgtggacaggccagaaaagaggggttcctcaccgactg 120
           |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ccaggaactcaagtctcctcctcgtggacaggccagaaaagaggggttcctcaccgactg 350

                                                                       
Query: 121 gtccacctttccagtgactctccagacaagagaatgaagagaatgtattggtggtagatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gtccacctttccagtgactctccagacaagagaatgaagagaatgtattggtggtagatc 290

                                                                       
Query: 181 tctcaggcccagctgcccccaccaaaagccacatgtgtcatatacaaactgtctagctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tctcaggcccagctgcccccaccaaaagccacatgtgtcatatacaaactgtctagctga 230

                                        
Query: 241 gcccctttcagattttcagtcaaacaaaa 269
           |||||||||||||||||||||||||||||
Sbjct: 229 gcccctttcagattttcagtcaaacaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)