BAC Information

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BAC

Clone NameMSMg01-177C14
Chromosome8 (Build37)
Map Location 104,179,372 - 104,179,992
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCdh11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177C14.T7 (MSMg01no177_c14.b1)MSMg01-177C14.TJ (MSMg01no177_c14.g1)
ACCAG371633AG371634
length704707
length of high quality
(start - end)
356 (49 - 404)628 (80 - 707)
definitionCHROMAT_FILE: MSMg01no177_c14.b1 PHD_FILE: MSMg01no177_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:40 2005CHROMAT_FILE: MSMg01no177_c14.g1 PHD_FILE: MSMg01no177_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTCCATAATGGATGTTAACTCTCTATCAGATGTAGGGTT
GGTAAGGATCTTTTCCCAATCTGTTGGTTGCCATTTTGTCCTATTGACAG
CATCCTTTGCCTTACAGAAGCTTTGCAATTTTATGAGATCATATTTGTGG
ATTCCTGATCTTAGATCATAAGCCATTGGCGTTCAGTTCAGGAAATTTTC
CCCTGTGCCCATGTGCTCAAAGCTCTTCCCCACTTCCTTTTCTATTAGTA
CCAGATTATCTGGTTTTATGTGGAGGTTCTTTATCCACTTGAACTTGATC
TATGTATAAGGAAATAAGAGCGAATCTATTTGCATTCTTCTACATGCTGA
CCACCAGTTGAGCCAGCACCATTTGTCAAAAATGGTATCCCCCCCCCCAC
TGGATGGTTTTACCTCTTTTGTCAGAGATCAAGTGGCCATAGGTGCGTGG
CCTCGTTTCTGGCCATACAATTCTGCTCGACTGATCTACCTGGCTGTCTT
TCTACAAATACCATGAAGGTTATTTCACTACTGCTCTGTAATACAGCTTG
AGGTCAGGGATTGTGATACTCGAAGAAGTTCTTTTAATGCTGAGAACACG
TTCTGCTATGCTGTGTACGTTGACATTCCATATGAAATTGCATACTACGC
TTTC
NTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAATCGACATGAGAGTTATC
ATCAGTCTGCACAGTTGCTTATCAGACATTATAGCTGGCTTCTAGCTGGT
CCAGCCTCTTAGAATACTTACAGTGTTTAAGATCACAGAGGAAGTTTGTT
TTATTTACCATTAGAAAGCTCAGTTGGCCAAACATCAGCCTGAGAGGCTG
AATGCTATATTATTGACCATACCACTGTTAACAAGAATATAAATTATGAG
CTGAGAGAGAAGAAAATGGATAAATGTTACATCCTTAGAGAAAGAATATC
TAGTTAACATTTGAGTTATATCTTGTAAAGATAGTTAATTTTATTTTGAA
ATATCTATCATGAATAGAAATATGCAACATATGTATATATTTTATTTATG
CTGAAATTTCTACTGCTGCATACATTTTTTCTCCTTTTACCAGCTTCCAT
TCCAAGTTCTCCTTCACCTCTTCTCCCTTTCCTACCTTCCATTCTTCTCT
ACCTTCTTCCTTAAAAATATTTGAGCTGATGGCAGAGTACCTAATAAATG
TTGCAGGACTTCACTTATATTTAAGCATTTATAATTTTATCTCACAATCC
AGCAACTTACACTACATAGTTTACCAAGAATTAGGAAATGCTTTGCAATA
TTTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_c14.g1 MSMg01no177_c14.g1 CHROMAT_FILE:
MSMg01no177_c14.g1 PHD_FILE: MSMg01no177_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:40 2005
         (628 letters)



>mm_chr8_104179166_104180193
          Length = 1028

 Score = 1131 bits (585), Expect = 0.0
 Identities = 612/621 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   gacatgagagttatcatcagtctgcacagttgcttatcagacattatagctggcttctag 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gacatgagagttatcatcagtctgcacagttgcttatcagacattatagctggcttctag 266

                                                                       
Query: 67  ctggtccagcctcttagaatacttacagtgtttaagatcacagaggaagtttgttttatt 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ctggtccagcctcttagaatacttacagtgtttaagatcacagaggaagtttgttttatt 326

                                                                       
Query: 127 taccattagaaagctcagttggccaaacatcagcctgagaggctgaatgctatattattg 186
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 taccattaaaaagctcagttggccaaacatcagcctgagaggctgaatgctatattattg 386

                                                                       
Query: 187 accataccactgttaacaagaatataaattatgagctgagagagaagaaaatggataaat 246
           ||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||
Sbjct: 387 accataccactgttaacaagagtataaattatgagctcaaagagaagaaaatggataaat 446

                                                                       
Query: 247 gttacatccttagagaaagaatatctagttaacatttgagttatatcttgtaaagatagt 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gttacatccttagagaaagaatatctagttaacatttgagttatatcttgtaaagatagt 506

                                                                       
Query: 307 taattttattttgaaatatctatcatgaatagaaatatgcaacatatgtatatattttat 366
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 507 taattttattttgaaatatctatcataaatagaaatatgcaacatatgtatatattttat 566

                                                                       
Query: 367 ttatgctgaaatttctactgctgcatacattttttctccttttaccagcttccattccaa 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ttatgctgaaatttctactgctgcatacattttttctccttttaccagcttccattccaa 626

                                                                       
Query: 427 gttctccttcacctcttctccctttcctaccttccattcttctctaccttcttccttaaa 486
           |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 627 gttctccttcccctcttctccctttcctaccttccattcttctctacctccttccttaaa 686

                                                                       
Query: 487 aatatttgagctgatggcagagtacctaataaatgttgcaggacttcacttatatttaag 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 687 aatatttgagctgatggcagagtacctaataaatgttgcaggacttcacttctatttaag 746

                                                                       
Query: 547 catttataattttatctcacaatccagcaacttacactacatagtttaccaagaattagg 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 catttataattttatctcacaatccagcaacttacactacatagtttaccaagaattagg 806

                                
Query: 607 aaatgctttgcaatattttcc 627
           ||| |||||||||||||||||
Sbjct: 807 aaacgctttgcaatattttcc 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)