BAC Information

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BAC

Clone NameMSMg01-177H05
Chromosome8 (Build37)
Map Location 36,569,073 - 36,677,442
singlet/doubletdoublet
Overlap geneMfhas1
Upstream geneLOC666746, Dusp4, LOC675578, Tnks, LOC666792, LOC666797, LOC666804, Ppp1r3b, Thex1
Downstream geneLOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e, Lonrf1, EG544878, 6430573F11Rik, Dlc1, LOC100042892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177H05.T7 (MSMg01no177_h05.b1)MSMg01-177H05.TJ (MSMg01no177_h05.g1)
ACCAG371837AG371838
length701701
length of high quality
(start - end)
552 (45 - 596)544 (75 - 618)
definitionCHROMAT_FILE: MSMg01no177_h05.b1 PHD_FILE: MSMg01no177_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:01 2005CHROMAT_FILE: MSMg01no177_h05.g1 PHD_FILE: MSMg01no177_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,569,073 - 36,569,620)(36,676,899 - 36,677,442)
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTTCCCTCCTCTAAAAAAATAGATGTTGTGCTCTAAAACCCAATT
CCACAAAGACTAGACCAGAGGACAGGAGAACATGACCACATTTAGGAAGC
CGGGGTGGGAGGGATAGGTCAGTAATATGTTTAACAGAACCAAGAAACCA
GAATCACAAGTTAGCACTGGGGAAAGCTAGCCCAGCTGTGTCACATAGCA
AACCCTTCAGAGCCGTTGCCAGGGTTTTAAGGTGAGGAGAGCTAAGTCAA
GGAAGTGGGGCGAAAGCAGTGGAGACATTGGTTTGAAAAGAAGCAAGGGA
CCCAAATCCTTGCTGACCCAGCAGGCGTTTGGGTGCTTGTTCTCATTGAG
GGGAATTAACGCATTCCCCCACCCCACCCTCCTTGTGGGTAAGCAAGGTG
TTCAGCCAGATTAGTTCCCAGAACAGAGAAGCTAGACTTCACCCTCCAGG
TGGAAGAAGAAAGACTCTTCCCTTGGGGCCTCTGGCCATCTATAAAGAGA
CTACACAGGTTTCTTAACTGTTTTAAGAACAGGGTTGGACTGTGTAGTTC
AGGCTGGTCAGAAACTCATAAACCTCCTGTCTCTGCCTTTAAAGACCAGC
ATTACAAGTGTGAGCCGCCATGTCCGGTCTGTTCGTTGACTCTCAAAGTA
A
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGGGCTATGTGGTGAAGGTAGTTTT
AACTTCGTGGGAAACTGACGAATTCCATCAAAGTGGCTACAGTATTTTCC
ATTTCCAGCATCACGATGGGGAAGTCCCAGGTATTACACATCTTCCTGAC
ACTTCATCTGCATCTCAGCCACAGAATGCTATGCAGTGCCACCTCCTGAA
TCCACACTTCTCCAGTGACTCACAATGACATCTTTTTGTACACTCACTTT
CCATTGCTAAACCAGACTCGGGGACAAGACTCTTCGGATCTTTTTAGCTA
TTTATAACAGAGCCTTGGTCTTTTTTTTTTTTTTTTAATCAGGTGTTTTC
AAGCATATTCCCACTAGCGGAGGTTGCCTGTTCATTTTCTCAACAGTTCT
TTTAAGGGCCAAAAGCTTTCAATTTTAATAACTACATTTTTTTCTTTGTT
TCTATATCTAAAAAGCAATAATTGTTGTTAGGCAGGAGGACTGGGCTGAA
TACATAGGGTTTCCAGGGCAGGAAACTACTCTGCAAACAGTGGATACCTA
TTGTACATTTTTCCATTGTAAGCAGGAAATACATTTGGACGGATGTTTAT
GCGAGCGACACAGACCTTTTATTGCTAGCTCCTACAACAGGTTCTCATCC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_h05.b1 MSMg01no177_h05.b1 CHROMAT_FILE:
MSMg01no177_h05.b1 PHD_FILE: MSMg01no177_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:01 2005
         (552 letters)



>mm_chr8_36568869_36569820
          Length = 952

 Score = 1036 bits (536), Expect = 0.0
 Identities = 545/548 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctttccctcctctaaaaaaatagatgttgtgctctaaaacccaattccacaaag 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctttccttcctctaaaaaaatagatgttgtgctctaaaacccaattccacaaag 264

                                                                       
Query: 65  actagaccagaggacaggagaacatgaccacatttaggaagccggggtgggagggatagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actagaccagaggacaggagaacatgaccacatttaggaagccggggtgggagggatagg 324

                                                                       
Query: 125 tcagtaatatgtttaacagaaccaagaaaccagaatcacaagttagcactggggaaagct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcagtaatatgtttaacagaaccaagaaaccagaatcacaagttagcactggggaaagct 384

                                                                       
Query: 185 agcccagctgtgtcacatagcaaacccttcagagccgttgccagggttttaaggtgagga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agcccagctgtgtcacatagcaaacccttcagagccgttgccagggttttaaggtgagga 444

                                                                       
Query: 245 gagctaagtcaaggaagtggggcgaaagcagtggagacattggtttgaaaagaagcaagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagctaagtcaaggaagtggggcgaaagcagtggagacattggtttgaaaagaagcaagg 504

                                                                       
Query: 305 gacccaaatccttgctgacccagcaggcgtttgggtgcttgttctcattgaggggaatta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gacccaaatccttgctgacccagcaggcgtttgggtgcttgttctcattgaggggaatta 564

                                                                       
Query: 365 acgcattcccccaccccaccctccttgtgggtaagcaaggtgttcagccagattagttcc 424
           | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agggattcccccaccccaccctccttgtgggtaagcaaggtgttcagccagattagttcc 624

                                                                       
Query: 425 cagaacagagaagctagacttcaccctccaggtggaagaagaaagactcttcccttgggg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cagaacagagaagctagacttcaccctccaggtggaagaagaaagactcttcccttgggg 684

                                                                       
Query: 485 cctctggccatctataaagagactacacaggtttcttaactgttttaagaacagggttgg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cctctggccatctataaagagactacacaggtttcttaactgttttaagaacagggttgg 744

                   
Query: 545 actgtgta 552
           ||||||||
Sbjct: 745 actgtgta 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no177_h05.g1 MSMg01no177_h05.g1 CHROMAT_FILE:
MSMg01no177_h05.g1 PHD_FILE: MSMg01no177_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:02 2005
         (544 letters)



>mm_chr8_36676657_36677600
          Length = 944

 Score = 1044 bits (540), Expect = 0.0
 Identities = 543/544 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgggctatgtggtgaaggtagttttaacttcgtgggaaactgacgaattccatcaaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 ctgggctatgtggtgaaggtagttttaacttcgtgggaaactgacgaattccatcaaagt 727

                                                                       
Query: 61  ggctacagtattttccatttccagcatcacgatggggaagtcccaggtattacacatctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ggctacagtattttccatttccagcatcacgatggggaagtcccaggtattacacatctt 667

                                                                       
Query: 121 cctgacacttcatctgcatctcagccacagaatgctatgcagtgccacctcctgaatcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cctgacacttcatctgcatctcagccacagaatgctatgcagtgccacctcctgaatcca 607

                                                                       
Query: 181 cacttctccagtgactcacaatgacatctttttgtacactcactttccattgctaaacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 cacttctccagtgactcacaatgacatctttttgtacactcactttccattgctaaacca 547

                                                                       
Query: 241 gactcggggacaagactcttcggatctttttagctatttataacagagccttggtctttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gactcggggacaagactcttcggatctttttagctatttataacagagccttggtctttt 487

                                                                       
Query: 301 ttttttttttttaatcaggtgttttcaagcatattcccactagcggaggttgcctgttca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttttttttttttaatcaggtgttttcaagcatattcccactagcggaggttgcctgttca 427

                                                                       
Query: 361 ttttctcaacagttcttttaagggccaaaagctttcaattttaataactacatttttttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ttttctcaacagttcttttaagggccaaaagctttcaattttaataactacatttttttc 367

                                                                       
Query: 421 tttgtttctatatctaaaaagcaataattgttgttaggcaggaggactgggctgaataca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tttgtttctatatctaaaaagcaataattgttgttaggcaggaggactgggctgaataca 307

                                                                       
Query: 481 tagggtttccagggcaggaaactactctgcaaacagtggatacctattgtacatttttcc 540
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 306 tagggtttccagggcaggaaactactctgtaaacagtggatacctattgtacatttttcc 247

               
Query: 541 attg 544
           ||||
Sbjct: 246 attg 243


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)