BAC Information

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BAC

Clone NameMSMg01-177K05
Chromosome8 (Build37)
Map Location 4,709,859 - 4,710,435
singlet/doubletsinglet
Overlap genenone
Upstream geneClec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223
Downstream geneLOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687, LOC436026, Slc10a2, LOC434275, LOC623409, LOC669429
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177K05.T7 (MSMg01no177_k05.b1)MSMg01-177K05.TJ (MSMg01no177_k05.g1)
ACCAG371966AG371967
length722721
length of high quality
(start - end)
580 (44 - 623)483 (75 - 557)
definitionCHROMAT_FILE: MSMg01no177_k05.b1 PHD_FILE: MSMg01no177_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:14 2005CHROMAT_FILE: MSMg01no177_k05.g1 PHD_FILE: MSMg01no177_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:14 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACAGAGATCCTCTTGCCTCTGCCTCCCAAGTGCTGGAATTAAAGGCA
TGAGCCACTAACACCTGGACACACCTCGACTCTATTCCACCTCCTTAGAA
ACTCTCACACTTCATGCATATACTTTTTGGACTGCTATATATTCTTAGTA
ATTAGCCTTTTCCTCCTAAGCAGCATCATTCTTCATAATTTTTTTCTTCT
GAGTTCTACTTGATCCAACATGTATAGTGACTTCAGAATACTACTGGTTA
AGGTATGCACCATAAATATTCTTGTAGACAGTACAAAGTTTAATATTGCT
TTTTTAACCAGTTGAATACTCACTATCTTTTAATTGGTATGTTTAAGCCA
TTCATGTTGAATGCATTTTTTTATGTGTTTAATATTAAAATCTGTGGCAG
GCCAAAGAAGGGACAGACTGACACTGGCTTCATCTCTGTACTGTGGATCA
GTGAGGAAGCAGTTCAACTCTCAAACAGGAGACCCAAGCAGCTTGTCATT
CATTCTCATCACCATGAGCTCCTCATACCTGATTCTATCTTTATAATATC
AAAACGTCACCTTTAGTTTTACACAGAGCCTTGTGTACAATAACTGTTCA
ATGTACACCATGTCACCTGTACTTTGGTAATAGGATGAACCATACATTAT
ACATTTTAAGCTGCATTTAAAN
CGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGA
GAAACACCTGAAAAAAAAATGTTCAACATCCTTAATCATCAGAGAAATGC
AAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAAA
AACACTCCTCCATTGTTGGTGGGATTGCAAGATTGTACAACCACTCTGGA
AATCAGTCTGGCGGTTCCTCAGAAAATTGGATATAGTACTACCGGAGGAT
CCCGCAATGCCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAA
ATGTGGTACATTTACACAATGGAGTACTACTGATCTATTAAAGAGAATGA
ATTTATGACATTCTTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGA
GTGAGGTAACACAATCACAAAAGAACTCAAATGATATGTTCTCACTGATA
GCTGGATATTAGCCCAGAAACTTAGTATACCCGAGATATAAGATACCATT
TGCAAAACACATGAAACTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_k05.b1 MSMg01no177_k05.b1 CHROMAT_FILE:
MSMg01no177_k05.b1 PHD_FILE: MSMg01no177_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:14 2005
         (580 letters)



>mm_chr8_4709656_4710635
          Length = 980

 Score =  913 bits (472), Expect = 0.0
 Identities = 553/580 (95%), Gaps = 6/580 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacagagatcctcttgcctctgcctcccaagtgctggaattaaaggcatgagcc 63
           |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 204 ggaattcacagagatcctcttgcctctgtctcctaagtgctggaattaaaggcatgagcc 263

                                                                       
Query: 64  actaacacctggacacacctcg-actctattccacctccttagaaactctcacacttcat 122
           |||||||||||||||||| | | || |||||||||||||||||||||||||||||| |||
Sbjct: 264 actaacacctggacacactt-gtacactattccacctccttagaaactctcacactccat 322

                                                                       
Query: 123 gcatatactttttggactgctatatattcttagtaattagccttttcctcctaagcagca 182
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 323 gcatatactttttggacagctatatattcttagtaattagccttttcctcctaagcaaca 382

                                                                       
Query: 183 tcattcttcataattttttt-cttctgagttctacttgatccaacatgtatagtgacttc 241
           |||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 383 tcattcttcatatttttttttcttctgagttctacttgatccaacatgtttagtgacttc 442

                                                                       
Query: 242 agaatactactggttaaggtatgcaccataaatattcttgtagacagtacaaagtttaat 301
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 443 agaatactactggttaaggtatgtaccataaatattcttgtagacagtacaaagtttaat 502

                                                                       
Query: 302 attgcttttttaaccagttgaatactcactatcttttaattggtatgtttaagccattca 361
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 attgctttttaaaccagttgaatactcactatcttttaattggtatgtttaagccattca 562

                                                                       
Query: 362 tgttgaatgcatttttttatgtgtttaatattaaaatctgtggcaggccaaagaagggac 421
           ||||| ||| ||||||| |||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 563 tgttggatgtatttttt-atgtgtttaatattaaaatctgtggcaggctaaagacgggac 621

                                                                       
Query: 422 agactgacactggc-ttcatctctgtactgtggatcagtgaggaagcagttcaactctca 480
           |||||||||||||| || | |||||||||||||||| |||||||||||||||||||||||
Sbjct: 622 agactgacactggcctt-acctctgtactgtggatctgtgaggaagcagttcaactctca 680

                                                                       
Query: 481 aacaggagacccaagcagcttgtcattcattctcatcaccatgagctcctcatacctgat 540
           |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 681 aacaggagacccaagcagcttgacattcattctcatcaccatgaactcctcatacctgat 740

                                                   
Query: 541 tctatctttataatatcaaaacgtcacctttagttttaca 580
           |||||||||||||||||||||| ||| |||||||||||||
Sbjct: 741 tctatctttataatatcaaaacatcatctttagttttaca 780


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)