BAC Information

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BAC

Clone NameMSMg01-177M21
Chromosome8 (Build37)
Map Location 26,406,630 - 26,407,220
singlet/doubletsinglet
Overlap genenone
Upstream gene1810011O10Rik, Indol1, Indo, Adam18, Adam3, Adam5, Adam32, Adam9, Tm2d2, Htra4, Plekha2, LOC100042390, Tacc1
Downstream geneLOC670822, LOC100040998, Fgfr1, D030041N04Rik, LOC100042416, Whsc1l1, Ppapdc1, Bag4, Lsm1, Star, Ash2l, Kcnu1, Hgsnat, 4930444A02Rik, Fnta, Hook3, 1700047A11Rik, Rnf170, Thap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177M21.T7 (MSMg01no177_m21.b1)MSMg01-177M21.TJ (MSMg01no177_m21.g1)
ACCAG372086AG372087
length726698
length of high quality
(start - end)
372 (51 - 422)592 (82 - 673)
definitionCHROMAT_FILE: MSMg01no177_m21.b1 PHD_FILE: MSMg01no177_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:26 2005CHROMAT_FILE: MSMg01no177_m21.g1 PHD_FILE: MSMg01no177_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTGGTACCCATATTTAAAGACATGTCTGGGGGCTGGAGAG
GTGGCTCAGTGGTTAAGAACACTGACTGTTTTTCCAGAGGACCTGGGGTT
CAATTCCCGGCCACCAACAAAGCAGCTTACAACTGTCTGTAACTCCAGTA
TCTGATACCCTCATATAGACATACATGCAGGCAACACACCAGTGTACATA
AAATAAAAATAAATTAATTGTTTTTAAAAAGTATATCTGTGCCGGGCGGT
GGTGGCATACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGACAGAT
TTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTTCAGGACAGCCA
GAGCTACACAGAGAAACCCCGTCTGGAATAACCTAAAAAAAAAAAAAAAA
AAAAAAAAGTTTCTCTGTGTGTATTCTGTGTGTGATGTGTGTATATGGTG
TGTGTTACTGCCTAAACGCTCTTTTCACTTTTATTTACTTTTATATTTCC
GCTCCTTTCTTCTTCATCATGCTACATTCTTTTTGTTTTTATATTAGTTT
CCTCCCGGCCTTCGGTTTTTTATTTTTTTTTTCCTCCCTCATTTCTATCT
CTCTATTTAACCACTTACCACCATCAATAATTCCCTTATCAGCCATTCTA
CAAACCCTTCATTATATTCCCCTACC
NNCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAACACACACAGTCAC
CCTTGACTTAAAATGGGTACATATCATGTGTATGAAATAAGTCTTTCTGT
GTTCAGTATTGGAACCTGGGGTTAACTTGGTCTCACAGGACGACCTTGAC
TATTCCAATTCAAGTTTCTTATAAACATTGGTGATACTGGTCCCATGTAG
ACTGGCCACCGTGAGTAGGTGCTGTCTGGTAAAGGAGAAGTAGTAAGATG
CAGTCATTTTTGGAAGGAGTAGCAGTCCAAGCCATCATGTTCTTGGAGTT
TAGAACCTGGATGGTCCACAGTGCCGCACACCTTTAATCCCAGCACTGGG
GAGGCAGAGGCAGGAGGATCTCTGTGAGTTTGAGGCCAGCATGGTTTACA
TAGTGAGTTCCAGGATAGTCAGATATACACACTGAGACTCTGTCTCAAAA
AACCAAAAATGAATAAATAATAAATCATAAAAGGGGGCTTGAGAGATGGC
TTGGTGGTTAAAAGCGCTGGGTGCTTTTTCAGAGGACCTGAGTTTGATTC
CTAGCACTCACATGGAGTAGGCTATGGACCAACTGTAACTCCAGGTCCAA
GGGACCCGATACCCTCATCTGGCATCGTGGGCATCAGGCACACATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_m21.g1 MSMg01no177_m21.g1 CHROMAT_FILE:
MSMg01no177_m21.g1 PHD_FILE: MSMg01no177_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:26 2005
         (592 letters)



>mm_chr8_26406430_26407420
          Length = 991

 Score = 1067 bits (552), Expect = 0.0
 Identities = 582/592 (98%), Gaps = 1/592 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccaacacacacagtcacccttgacttaaaatgggtacatatcatgtgtatgaaataag 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 tcccaacacacacagtcacccttgacttaaaatgggtacatatcgtgtgtatgaaataag 260

                                                                       
Query: 61  tctttctgtgttcagtattggaacctggggttaacttggtctcacaggacgaccttgact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctttctgtgttcagtattggaacctggggttaacttggtctcacaggacgaccttgact 320

                                                                       
Query: 121 attccaattcaagtttcttataaacattggtgatactggtcccatgtagactggccaccg 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attccaattcaactttcttataaacattggtgatactggtcccatgtagactggccaccg 380

                                                                       
Query: 181 tgagtaggtgctgtctggtaaaggagaagtagtaagatgcagtcatttttggaaggagta 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 tgagtaggtgctgtctggtaaaggagaagtagtaagatgc-gtcatttttggaaggagta 439

                                                                       
Query: 241 gcagtccaagccatcatgttcttggagtttagaacctggatggtccacagtgccgcacac 300
           |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 440 gcagcccaagccatcatgttcttggagtttagaacctggatggtccacagtggcgcacac 499

                                                                       
Query: 301 ctttaatcccagcactggggaggcagaggcaggaggatctctgtgagtttgaggccagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctttaatcccagcactggggaggcagaggcaggaggatctctgtgagtttgaggccagca 559

                                                                       
Query: 361 tggtttacatagtgagttccaggatagtcagatatacacactgagactctgtctcaaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tggtttacatagtgagttccaggatagtcagatatacacactgagactctgtctcaaaaa 619

                                                                       
Query: 421 accaaaaatgaataaataataaatcataaaagggggcttgagagatggcttggtggttaa 480
           ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 620 acccaaaatgaataaataataaatcataaaagggggctagagagatggcttggtggttaa 679

                                                                       
Query: 481 aagcgctgggtgctttttcagaggacctgagtttgattcctagcactcacatggagtagg 540
           ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 680 aagcgctgggtgctttttcagagaacctgagtttaattcctagcactcacatggagtagg 739

                                                               
Query: 541 ctatggaccaactgtaactccaggtccaagggacccgataccctcatctggc 592
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ctagggaccaactgtaactccaggtccaagggacccgataccctcatctggc 791


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 991
Length adjustment: 10
Effective length of query: 582
Effective length of database: 981
Effective search space:   570942
Effective search space used:   570942
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)