Query= MSMg01no178_d12.b1 MSMg01no178_d12.b1 CHROMAT_FILE:
MSMg01no178_d12.b1 PHD_FILE: MSMg01no178_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:58 2005
(581 letters)
>mm_chr8_122304384_122305362
Length = 979
Score = 1050 bits (543), Expect = 0.0
Identities = 569/579 (98%), Gaps = 6/579 (1%)
Strand = Plus / Plus
Query: 5 gaattctgctacgcacgacaaggatcacaactcaaggtatcagagccaggtgtgaaaact 64
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgctacgtaggacaaggatcacaactcaaggtatcagagccaggtgtgaaaact 264
Query: 65 gtagggagaggtctctttccctgcaccctcattcctggccgctgcctgcatatgtcttac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtagggagaggtctctttccctgcaccctcattcctggccgctgcctgcatatgtcttac 324
Query: 125 tgctctgcccactggaccaccctgcctggccagctgccatcctaactctgtgccttctca 184
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
Sbjct: 325 tgctctgcccactggaccaccctgcctggccggctgccatcctaactctgtg---tct-a 380
Query: 185 gtggccagagccgccctaacaaaactgtcaccatgacaaccctccctgaaagactctcaa 244
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggccagagccaccctaacaaaactgtcaccatgacaaccctccctgaaagactctcaa 440
Query: 245 ggcttccttctgaggttcataagatgcccct-cccctttttttcaaactcacctgctatc 303
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 ggcttccttctgaggttcataagatgcccctccccctttttttcaaactcacctgctatc 500
Query: 304 aaatttctaatgtcagccagggctgccctcctcccttcatgacagtcagcctcagctact 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatttctaatgtcagccagggctgccctcctcccttcatgacagtcagcctcagctact 560
Query: 364 gcctggaactcctcagcctttccttgcccagctcccccc-tgagccaaacagtctcacac 422
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 gcctggaactcctcagcctttccttgcccagctccccccttgagccaaacagtctcacac 620
Query: 423 tgcctcagtcagaccttcccattccgtgacccctgagctgtcttctgcgtctccattacc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcctcagtcagaccttcccattccgtgacccctgagctgtcttctgcgtctccattacc 680
Query: 483 tctgtgactgtttggtctggctgtactttcttatctatttcccataaaggcacctgtcag 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctgtgactgtttggtctggctgtactttcttatctatttcccataaaggcacctgtcag 740
Query: 543 ccctgcctctgtcccctcagcaggtgccagcacctagcc 581
|||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccctgcctctgtcccctcagcaggtgccagcacctagcc 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 979
Length adjustment: 10
Effective length of query: 571
Effective length of database: 969
Effective search space: 553299
Effective search space used: 553299
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no178_d12.g1 MSMg01no178_d12.g1 CHROMAT_FILE:
MSMg01no178_d12.g1 PHD_FILE: MSMg01no178_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:58 2005
(641 letters)
>mm_chr8_122444445_122445485
Length = 1041
Score = 1089 bits (563), Expect = 0.0
Identities = 569/571 (99%)
Strand = Plus / Minus
Query: 1 caggccagcagtttcaaattcagttaacagtgtgagtctgaggtcctaactccagaggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 caggccagcagtttcaaattcagttaacagtgtgagtctgaggtcctaactccagaggga 512
Query: 61 cctgaagcggccactagccactgctctgggggacacctatggctataacaaatgaacccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 cctgaagcggccactagccactgctctgggggacacctatggctataacaaatgaacccc 452
Query: 121 agcaaggtaaggggaagaaaacaaaagctgggtaaatgtttgctgaaggatattagtcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 agcaaggtaaggggaagaaaacaaaagctgggtaaatgtttgctgaaggatattagtcac 392
Query: 181 acatagtgacccacaaataaaacagataccacactgaagagctaacatacagaccttcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 acatagtgacccacaaataaaacagataccacactgaagagctaacatacagaccttcac 332
Query: 241 agggcgagactgcaggcttctaggggccagtcccacccactgcacctagtggacactacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 agggcgagactgcaggcttctaggggccagtcccacccactgcacctagtggacactacc 272
Query: 301 accgagaacaagcctgcgttcttgttggcattcacacccacacaaactggagacattaaa 360
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 accgagaacaaacctgtgttcttgttggcattcacacccacacaaactggagacattaaa 212
Query: 361 gacactgtcgggccgggcgtggtggcgcacttggaaggcaggtgaatttctgagttcaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gacactgtcgggccgggcgtggtggcgcacttggaaggcaggtgaatttctgagttcaag 152
Query: 421 gccagcctggtctacacagagaaaccctgtctctaaaaaccaaaaaaaaagacactgtgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 gccagcctggtctacacagagaaaccctgtctctaaaaaccaaaaaaaaagacactgtgt 92
Query: 481 cagggcatgggggtactcgtctaatcctagcacatgaggcagaagcaggtgccatctgcg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 cagggcatgggggtactcgtctaatcctagcacatgaggcagaagcaggtgccatctgcg 32
Query: 541 ggtttctgaactttgactctgtagaccaggc 571
|||||||||||||||||||||||||||||||
Sbjct: 31 ggtttctgaactttgactctgtagaccaggc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
