BAC Information

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BAC

Clone NameMSMg01-178E04
Chromosome8 (Build37)
Map Location 8,347,443 - 8,347,809
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039836, Efnb2, 9430010O03Rik, Tmem28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178E04.T7 (MSMg01no178_e04.b1)MSMg01-178E04.TJ (MSMg01no178_e04.g1)
ACCAG372400AG372401
length713770
length of high quality
(start - end)
373 (45 - 417)267 (77 - 343)
definitionCHROMAT_FILE: MSMg01no178_e04.b1 PHD_FILE: MSMg01no178_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:01 2005CHROMAT_FILE: MSMg01no178_e04.g1 PHD_FILE: MSMg01no178_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCGCTGAATCTCTTCTGATTAATTATTCACCAGCACTCAGAACTTTTC
ATGACACTTTGTAGACTCCATGAAGCTCTAATGTATTCTATGCATGGTAT
AGAAATTAGGAAATCCATACTTTTTCACAGGAAAAAAATAAAATTACATC
TTCCTTTTGATTCCTTCAGTGACCTGGTAAGTGACAAATCACAGAAGTCA
CAGCATAACAGTGATTGACATTGCTTTCATTCTCAGCTCTCTCTAATCAG
TCACCACGCTTAGCACACAGACCTCTTTCTAAATCTCATGACTTGGCGCA
TTCACCACGAAGCACGCATACCATGATCTCCAAAAAGATGTATGCTCTCT
TAATGATTTTCAAGGCCACTAAAAAGATGGTCTGCTTTTCTTTGAAATGC
TAAACCATTTATTTTACACATTTAGGCATATGTTGGGAGGAAGGTAGTAA
AACTGTACATTTTAGGATTTCATGACAGGACACCATATTAAGAGCCTCTG
ACCTGGTGTTTTTTATATTGACTCGCCTGCCCGCCGAATACGTTTGATTT
CTGTCACTATCTCTCCTGGATCCACTCATGTTTCCCATCCAGTTGCAATG
GATTTTAGTCACTTGCCGTACCTTCGAAGTTAATGCATTTTTATAGGTAT
TATTTTCCCCGTG
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAGACTTATAGAAACCTCAAGGGC
TTCTGCCTTTATCAAAAGTTTTTCCTTTTAAAATTTATGTGTATGGGTGT
TTCCCCCCCATGTAAGTCTGTAGAACAAAGTCCAGAAGAGGGTCTCAGAT
CCCCGATAACTGGCGTTACAGATGGTTTTGTGGTGCCATGTAGGTTCTGG
GAATCAAAGCCAGGCCCTCTGGAAGAGCGGCCAGATCTGTTAACCACCAA
GCCACCTCTCCAGCCCCAGCATCTAGTCTCTGTAGGTAAAACAAAAATCA
ATAAGAGGTTTTTTTTTTTTCCCCCCCCCCCCCCCCCTAGGTTATCTATT
GTTATTTTTTATTGATTTTTTCCCCCCCATTAAGATAAAAAAGCACTCTT
CTGTTGTGGAATTTAATGCCTACACCTGACGTTTGTTCCATTTCCCCGCT
TGTCCCTTCTCATCTCTCCTCTGTTTGATTCCTATCTTAATTTATTTATT
GATCACTTTTTTTTTTCAATATTATATCTTTACGCCCATTATTATTCCCT
CCCCTTACAATTTTACGTTCTCACGCCCCTAATAATCCATTTCACGCTCT
TTTCCTTTTTACTTCCTTCCCCACCACTCCTCCCAATTTTTACGAAATTA
TCTATATTATTCTACCTCCCCCTTTTCTTATTATCTTTTCAAATCTCTTT
TAATTAACCTCACTTATACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_e04.b1 MSMg01no178_e04.b1 CHROMAT_FILE:
MSMg01no178_e04.b1 PHD_FILE: MSMg01no178_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:01 2005
         (373 letters)



>mm_chr8_8347239_8348011
          Length = 773

 Score =  650 bits (336), Expect = 0.0
 Identities = 360/368 (97%), Gaps = 2/368 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcgctgaatctcttctgattaattattcaccagcactcagaacttttcatgacact 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 205 gaattcgctgaatctcttctgattaattattcaccagcactcagaacttttcatgatact 264

                                                                       
Query: 65  ttgtagactccatgaagctctaatgtattctatgcatggtatagaaattaggaaatccat 124
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgtagactccatgaagccctaatgtattctatgcatggtatagaaattaggaaatccat 324

                                                                       
Query: 125 actttttcacaggaaaaaaataaaattacatcttccttttgattccttcagtgacctggt 184
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actttttcacaggaaaaaattaaaattacatcttccttttgattccttcagtgacctggt 384

                                                                       
Query: 185 aagtgacaaatcacagaagtcacagcataacagtgattgacattgctttcattctcagct 244
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 385 aagtgacaaatcacagaagtcacagcataacagtgattgacatcgctttcattctcagct 444

                                                                       
Query: 245 ctctctaatcagtcaccacgcttagcacacagacctctttctaaatctcatgacttggc- 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 445 ctctctaatcagtcaccacgcttagcacacagacctctttctaaatctcatgacttg-ct 503

                                                                       
Query: 304 gcattcaccacgaagcacgcataccatgatctccaaaaagatgtatgctctcttaatgat 363
           ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 504 gcattcaccacgaagcacgcacaccatgatctccaaaaacatgtatgctctcttaatgat 563

                   
Query: 364 tttcaagg 371
           ||||||||
Sbjct: 564 tttcaagg 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)