BAC Information

Click to search

BAC

Clone NameMSMg01-178E13
Chromosome8 (Build37)
Map Location 54,928,671 - 54,929,030
singlet/doubletsinglet
Overlap genenone
Upstream geneAga, Neil3, LOC100040107
Downstream geneVegfc, Spcs3, Asb5, Spata4, Wdr17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178E13.T7 (MSMg01no178_e13.b1)MSMg01-178E13.TJ (MSMg01no178_e13.g1)
ACCAG372417AG372418
length724742
length of high quality
(start - end)
362 (46 - 407)242 (77 - 318)
definitionCHROMAT_FILE: MSMg01no178_e13.b1 PHD_FILE: MSMg01no178_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:03 2005CHROMAT_FILE: MSMg01no178_e13.g1 PHD_FILE: MSMg01no178_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTTTCTACTTGAATACTAAATCTTACAACTTCATCCAAGAAAAT
TTGATAGTTTTTTTTTTAATTTGTCTTCTTTTATGAACCATAGAACAAAC
ACATATGAACTGGAAAGTTTACTTTCTCTTTTATTCATTGAATAAGCAAT
GTCATTTGACTATGTAACCAATGAGAAACAATGTACTAGCTGTAAATGCT
ACAAAATGAAGGTTCTTGACTTAAATGGATTTTTTCTCTGGGTAGTTTGT
TAGTCAAGATTTATGTTTCTGTGACTGCACTTAATAAAGGAGAGATTTAT
TTTACTCTAAAGTTTTCGAAGTCTAAATCCATCATGGTTAACAAGTACTG
AATGCAGCTTGTACCCCCACCCACAAGAAGGACAAGATAAATAGCAGAAA
AAGGCCAAGAGTAAATTTCACTGTCAAGGACATTCCTCAATCAAATCTCA
CCTTACAAAATGCCACAGCCTCCTATTAGTCACTTCGAATTCTGACCTTA
TTAAAGGATTAACCCCTTCATTAGGTTGCATAACTCTTCAAACACTTCCC
CCTTTTACCTTTTTTTATGATTTTTTTATACGCTCCGATACCTTATTCCC
CCTTTTTCTTCTCTCTCTTATGCCAATCATGATCATACACCTTTTTTTAT
TTCCCCCCACCTTCCCCCCCCCCG
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGTGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCTTATTACTGGATATAGTACTACTGGAGGATC
CAGCATTTTTTTTTTTTGCCCCCCCCGCACCCCCCATGNNTNAATTGGTA
AGATGGACACATGCTCCACCCCCTTTCATAAAAAAAAATTTATGAGAGGG
GGAAGTTGGAAGGAACCCAGATGCTCCTCAGCAGAGGAATGGATACAGAA
AATGTGGTCCATCTATGCCATGGAGTACTCCTCACTTATCACTATTAACG
ATTCTTTGTTATACCCTACCTATTTGGCCCGTACCGGTTACGCGTTCTAT
TATTGATTGAGGATACCCAATTCAACCTCCGACCTCCCTCACATTTATAT
GCAACTGTTATAGAGGCCAACAAACAACTATATCCCTACCTTTTACCCAT
TTTTTTCGCCTCTTTTTTTTCTCCCTTCCACTGGGTCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_e13.b1 MSMg01no178_e13.b1 CHROMAT_FILE:
MSMg01no178_e13.b1 PHD_FILE: MSMg01no178_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:03 2005
         (362 letters)



>mm_chr8_54928468_54929230
          Length = 763

 Score =  658 bits (340), Expect = 0.0
 Identities = 355/360 (98%), Gaps = 1/360 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccttttctacttgaatactaaatcttacaacttcatccaagaaaatttgatagt 63
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 204 ggaattccttttctacttgaatactaaatcttacagcttcatccaagaaaatttgatagt 263

                                                                       
Query: 64  tttttttttaatttgtcttcttttatgaaccatagaacaaacacatatgaactggaaagt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttttttttaatttgtcttcttttatgaaccatagaacaaacacatatgaactggaaagt 323

                                                                       
Query: 124 ttactttctcttttattcattgaataagcaatgtcatttgactatgtaaccaatgagaaa 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 324 ttactttctcttttattcattgaataagcaatgtcatttgactatgtaaccaatgagaga 383

                                                                       
Query: 184 caatgtactagctgtaaatgctacaaaatgaaggttcttgacttaaatggatttttt-ct 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 384 caatgtactagctgtaaatgctacaaaatgaaggttcttgacttaaatggatttttttct 443

                                                                       
Query: 243 ctgggtagtttgttagtcaagatttatgtttctgtgactgcacttaataaaggagagatt 302
           ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 444 ctgggtagtttgttagtcaagttttatgtttctgtgactgcacttactaaaggagagatt 503

                                                                       
Query: 303 tattttactctaaagttttcgaagtctaaatccatcatggttaacaagtactgaatgcag 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tattttactctaaagttttcgaagtctaaatccatcatggttaacaagtactgaatgcag 563


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 763
Length adjustment: 9
Effective length of query: 353
Effective length of database: 754
Effective search space:   266162
Effective search space used:   266162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)