BAC Information

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BAC

Clone NameMSMg01-178K11
Chromosome8 (Build37)
Map Location 105,853,214 - 106,024,080
singlet/doubletdoublet
Overlap gene1600027J07Rik
Upstream geneCdh11, EG667618, LOC100041368
Downstream geneLOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178K11.T7 (MSMg01no178_k11.b1)MSMg01-178K11.TJ (MSMg01no178_k11.g1)
ACCAG372673AG372674
length694695
length of high quality
(start - end)		370 (45 - 414)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no178_k11.b1 PHD_FILE: MSMg01no178_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:30 2005CHROMAT_FILE: MSMg01no178_k11.g1 PHD_FILE: MSMg01no178_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,853,214 - 105,853,580)(106,023,798 - 106,024,080)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGAAGTTGCCTAGAGGCCAAGTCATTTGGAATATACTCTCAGAAT
GACACATAGCTGAGCAGCAATCCTGCTGGATGCCTTACCAGGACAGGAGA
GATGAGGTTTTATGAAAAATAAGAAAGAAAATCTAAGTGCCCCAAGTCAA
AGTATCATACAAATTTCCAAGCAGGCTGGAGAGGCCAATGGGTGGAACCA
TCTTCATCAACTTCTAGACACAAAGCCTTCTGGTCGTACAGTATGGAGGA
AATTCTACTTTTCACTTCCTACCCCATTTACTCATCAAGTTTCCTTTGTA
GGATTCTTTGGAAGATTAAATTTTCATCAAGAACGTAACTCATGCTCTGT
GCACTCCAAAGTTACCCCCCGCTCGCTCAACCCAGATCTCCAAGGGGGAA
AGCAAACAAGCTTGCCAACAGTAGGTGAGCCATCCATCTTTACTGAAGCC
GGTAATAGAGATATAAGAAGGATGAGATGTTTTCTCTGTTCTCAGGATAA
AACTCCGCCGCTTTTGAAGAATTCCTGCACGTATGCCAATGATCATAAAC
CTTGATTTCCTTAGAGCATCGTTGGATGCCATTTGTGATATCCACCTACG
TTTCTTTACCCCAACTTTTTTTTTTCCCCTTTTTCCCCCTCCCG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCTTGGTGTGACGATATGAGCCT
GAACCATTCTTGGCCCTGTGCAAGTACTTCATATTATCTGCATAAATCTA
TTGGTTGACTCACAGGTTTGTGAATAATAAAGACTGGAAACTGGGCGAGA
TGGTAGTGTTCCATGGCCCCCTCTAGTCAGCTATAGGCAGGGACAGCAAC
CTCCATCTTACTGTAGTGGATCCCCAGTAAGAATCTCTGGGAAGCTTCTT
TTCTAATAACCATAGTCTGATGTCTGTCCCTTGGGGTTCCCTCCCGTCCA
ACAGGTCTGTTATGCCACCCCACACCTGTGTTTCACGAAGCTCCCAGGGA
GCCTGGGTACTACCCCCCCCCGCCCTGAAGAACACTCTTTAAGAACTGCT
GTATTTGTATTCATTAGATCATGCTTGTGTGTGCAAGGCTTATGCCTTAA
CTTCAGTCTTTTGCGATCTTTCCACTGTTACGCCTTCGCGTTGTTCCCCC
ATTTTTCCCCATGCCTCTCTCTCTTTTGCTTCTTTCCCCTGCCTTTTTCC
CGCCCCACAGATCAATTTTTTTTATCCTATTACCCTCCTTACTTTTTAAC
ACCATCCCACTTTTTCCCCCATTTTTTTTCCCCTCCCCTTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_k11.b1 MSMg01no178_k11.b1 CHROMAT_FILE:
MSMg01no178_k11.b1 PHD_FILE: MSMg01no178_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:30 2005
         (370 letters)



>mm_chr8_105853011_105853780
          Length = 770

 Score =  679 bits (351), Expect = 0.0
 Identities = 363/367 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaagaagttgcctagaggccaagtcatttggaatatactctcagaatgacacat 63
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaagaaggtgactagaggccaagtcatttggaatatactctcagaatgacacat 263

                                                                       
Query: 64  agctgagcagcaatcctgctggatgccttaccaggacaggagagatgaggttttatgaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agctgagcagcaatcctgctggatgccttaccaggacaggagagatgaggttttatgaaa 323

                                                                       
Query: 124 aataagaaagaaaatctaagtgccccaagtcaaagtatcatacaaatttccaagcaggct 183
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aataagaaagaaaatctaagttccccaagtcaaagtatcatacaaatttccaagcaggct 383

                                                                       
Query: 184 ggagaggccaatgggtggaaccatcttcatcaacttctagacacaaagccttctggtcgt 243
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggagaggccaatgggtagaaccatcttcatcaacttctagacacaaagccttctggtcgt 443

                                                                       
Query: 244 acagtatggaggaaattctacttttcacttcctaccccatttactcatcaagtttccttt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acagtatggaggaaattctacttttcacttcctaccccatttactcatcaagtttccttt 503

                                                                       
Query: 304 gtaggattctttggaagattaaattttcatcaagaacgtaactcatgctctgtgcactcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtaggattctttggaagattaaattttcatcaagaacgtaactcatgctctgtgcactcc 563

                  
Query: 364 aaagtta 370
           |||||||
Sbjct: 564 aaagtta 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no178_k11.g1 MSMg01no178_k11.g1 CHROMAT_FILE:
MSMg01no178_k11.g1 PHD_FILE: MSMg01no178_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:30 2005
         (285 letters)



>mm_chr8_106023598_106024282
          Length = 685

 Score =  540 bits (279), Expect = e-158
 Identities = 282/283 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcttggtgtgacgatatgagcctgaaccattcttggccctgtgcaagtacttcatatta 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 483 agcttggtgtgacgatatgagcctgaaccattcttggccctgtggaagtacttcatatta 424

                                                                       
Query: 61  tctgcataaatctattggttgactcacaggtttgtgaataataaagactggaaactgggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tctgcataaatctattggttgactcacaggtttgtgaataataaagactggaaactgggc 364

                                                                       
Query: 121 gagatggtagtgttccatggccccctctagtcagctataggcagggacagcaacctccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gagatggtagtgttccatggccccctctagtcagctataggcagggacagcaacctccat 304

                                                                       
Query: 181 cttactgtagtggatccccagtaagaatctctgggaagcttcttttctaataaccatagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 cttactgtagtggatccccagtaagaatctctgggaagcttcttttctaataaccatagt 244

                                                      
Query: 241 ctgatgtctgtcccttggggttccctcccgtccaacaggtctg 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ctgatgtctgtcccttggggttccctcccgtccaacaggtctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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