Query= MSMg01no178_l19.b1 MSMg01no178_l19.b1 CHROMAT_FILE:
MSMg01no178_l19.b1 PHD_FILE: MSMg01no178_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:36 2005
(493 letters)
>mm_chr8_26180751_26181644
Length = 894
Score = 847 bits (438), Expect = 0.0
Identities = 477/492 (96%), Gaps = 5/492 (1%)
Strand = Plus / Minus
Query: 5 gaattcggctgcttttagcagcccctccccagggcagcctctgctgctgctgacccatga 64
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 694 gaattcggctgcttttagcagtccctccccagggcagcctctgctgctgctgacccatga 635
Query: 65 tgcagccctgacct---aaaaaaaataaatgaataactaaataaagggaaaaaatggcca 121
||||||||||| | ||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 634 tgcagccctga--tttaaaaaaaaataaatgaataactaaataacgggaaaaagtggcca 577
Query: 122 ggggatttagctcctcttcagaaagcaggagggaagccaggtggcacccagccagattca 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ggggatttagctcctcttcagaaagcaggagggaagccaggtggcacccagccagattca 517
Query: 182 aagccgcagaagtcctgtcccccatgcctgtcctcatgagggctgctgctttcttccctg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aagccgcagaagtcctgtcccccatgcctgtcctcatgagggctgctgctttcttccctg 457
Query: 242 gctcctcccacccaagggactttgaggacctagaggctaggggttgagctaagtggctcc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gctcctcccacccaagggactttgaggacctagaggctaggggttgagctaagtggctcc 397
Query: 302 catctggtaacagatttaagatctgagaagagctcctactgacgatgggggtcaagagag 361
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 396 catctggtaacagatttaagatctgagaagagctcctacagacgatgggggtcaagagag 337
Query: 362 gtgctgagaccaccggccatcttcggctggacgggcaggctcatcccatgcctgccagct 421
||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 336 gtgctgagaggagtggccatctttggctggacgggcaggctcatcccatgcctgccagct 277
Query: 422 gcagctggacctcagcaccgagggagagaagatgctgggcagtggttgagctgattatag 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 276 gcagctggacctcagcaccgagggagagaagatgctgggcagtggttgagctgattagag 217
Query: 482 gggagataatgg 493
||||||||||||
Sbjct: 216 gggagataatgg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 894
Length adjustment: 10
Effective length of query: 483
Effective length of database: 884
Effective search space: 426972
Effective search space used: 426972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no178_l19.g1 MSMg01no178_l19.g1 CHROMAT_FILE:
MSMg01no178_l19.g1 PHD_FILE: MSMg01no178_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:36 2005
(282 letters)
>mm_chr8_26124395_26125076
Length = 682
Score = 528 bits (273), Expect = e-154
Identities = 279/281 (99%)
Strand = Plus / Plus
Query: 1 cattcagtcaccaagaacaaaatgtaccctcagcaggaaacccggtaccagcactggcag 60
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 cattcagtcaccaagaacaaaatgtaccctcagcaggaaacccggtagtagcactggcag 260
Query: 61 ctaccatgtcaactgaaatgtattttctctcacatatatgtgacataagagtagagacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaccatgtcaactgaaatgtattttctctcacatatatgtgacataagagtagagacag 320
Query: 121 gatgatgggagggagaacacgagctgggcatggtggctcacgcctttaatcccagcactc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgatgggagggagaacacgagctgggcatggtggctcacgcctttaatcccagcactc 380
Query: 181 gggaagcagaggcaggtggatttctgagttcgaggccagcctggtctacaaagtgagttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggaagcagaggcaggtggatttctgagttcgaggccagcctggtctacaaagtgagttc 440
Query: 241 caggacagccagggctacacagagaaaccctgtctcgaaaa 281
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggacagccagggctacacagagaaaccctgtctcgaaaa 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
