BAC Information

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BAC

Clone NameMSMg01-179B19
Chromosome8 (Build37)
Map Location 45,970,006 - 45,970,238
singlet/doubletsinglet
Overlap geneLOC100039508
Upstream genenone
Downstream geneFat1, LOC100039673, Mtnr1a, EG622523, F11, Klkb1, Cyp4v3, BC035537, Tlr3, Sorbs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-179B19.T7 (MSMg01no179_b19.b1)MSMg01-179B19.TJ (MSMg01no179_b19.g1)
ACCAG372994AG372995
length737731
length of high quality
(start - end)
174 (427 - 600)233 (420 - 652)
definitionCHROMAT_FILE: MSMg01no179_b19.b1 PHD_FILE: MSMg01no179_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:02 2005CHROMAT_FILE: MSMg01no179_b19.g1 PHD_FILE: MSMg01no179_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTGTCCGAGAATCCGCGGAATTCTGC
TGTATTTACAAACATGATGTCTTTTGAGACCATTTTAGATTATACATCCA
CTCCTCGAAAAACACACGCCCGTCTTTGATGCCTCTCATATTTCTGATAG
AGACCACTGTCTTCATGATCTTCCACATGAAGTTGGGTTTCACATATGGT
GTCCTCCATGTGAAAAAAACCACCACTGTGTTGACAAGCTTCATTTATTC
ATATTATGTTCTGACCCTAATGATTTGTACCTTTACGTCGTGTGCCATGA
GACTTAACTGTGTCATCTCCATCTTCTCTCGAAAATTATTAACACAGTCA
GTCTTATACCCTTTGCAAGCTAATGCTTAGCCTGCATTTTACTTGTTTAT
ATATTTTCTGTAGGAACACCACGCTCTCCATCTACCAGATAAAATTCAAC
ATCTCACATACATGTTACACTTAATTACTAATCTGGGACACAGGCATTTC
TTTGAGATGAAAGCAAAATATTAACCTACTTAAATCAAACTGCAGACTTC
AGAAAGAAATAATGTTTCATGTTGGCTTCAGAAGACACTTTTCACTGAAG
AAAAGAGAAAAGAGTTTTAAGCAGAAGTCTATGGTAGATGAATCCCACCT
TCAGAGCCTCAGTCAGGATGAAGATGATCCTCTGAAGACCAGCTGCAGAG
CATAGTTCCTGTAGAAGTATATTTCGTAGTGCTTTGA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTACCTAGCTTATTTATAGTTTTTCGCTACTTTCT
CGACTATTCATTGAGTGCCTACCTGTGTGGTATGTTGCCATTGATTTACC
TCACTCTGTGTGATTTTTATATGTCTATTGATTGACTAATAACTGCATGA
CCTCATCCCTTTTATTCATTCATTTATTTATTGAATAAGTTCTTTCTCAA
TCTAATCATAATATAAGATGAGGATATACATGTTCTAAAACTACAAGTTA
AGTACATTAGCACATATTGACACCATAACCCCAGTGGTCTATTTACCTAA
GAGAAGACTCAAAGTCACAGGATAACAAGTGGATAATGCAAGGACTGCGG
AAGCTATGTCCCTCCAGCAAAAATAAGCCAGAGGACCAACGTGGCTGGAG
AGACCACCAAGCGTGTGTATAGAACAGGACGCAGTGAGAATAGACAAGAT
GTCACCTCACAGGACGTCTCCTCTGTGAGAAAAAGCCAAGAAGCTCAAAA
CAATGTTTGAAAGGACTTGCCTGTATTCACATGGCACATGACATTGTGAT
TATTTTCTTCTGACAGAAATAAGTTATATAAATAGGACATCAAAAGGAAC
ATGAAGCTTTGATCTCATTTCTAATTAATTGCACCCGGGTAAGATTCGGA
GCACATAAGTGAGTCGCAGTAAGCTTTACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no179_b19.g1 MSMg01no179_b19.g1 CHROMAT_FILE:
MSMg01no179_b19.g1 PHD_FILE: MSMg01no179_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:02 2005
         (233 letters)



>mm_chr8_45969806_45970438
          Length = 633

 Score =  451 bits (233), Expect = e-131
 Identities = 233/233 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaataagccagaggaccaacgtggctggagagaccaccaagcgtgtgtatagaacagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 aaaataagccagaggaccaacgtggctggagagaccaccaagcgtgtgtatagaacagga 374

                                                                       
Query: 61  cgcagtgagaatagacaagatgtcacctcacaggacgtctcctctgtgagaaaaagccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cgcagtgagaatagacaagatgtcacctcacaggacgtctcctctgtgagaaaaagccaa 314

                                                                       
Query: 121 gaagctcaaaacaatgtttgaaaggacttgcctgtattcacatggcacatgacattgtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gaagctcaaaacaatgtttgaaaggacttgcctgtattcacatggcacatgacattgtga 254

                                                                
Query: 181 ttattttcttctgacagaaataagttatataaataggacatcaaaaggaacat 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ttattttcttctgacagaaataagttatataaataggacatcaaaaggaacat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)