BAC Information

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BAC

Clone NameMSMg01-180P21
Chromosome8 (Build37)
Map Location 37,892,041 - 38,034,380
singlet/doubletdoublet
Overlap geneA730069N07Rik
Upstream geneLOC671641, D8Ertd82e, Lonrf1, EG544878, 6430573F11Rik, Dlc1, LOC100042892
Downstream geneAI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121, LOC621149, Sgcz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180P21.T7 (MSMg01no180_p21.b1)MSMg01-180P21.TJ (MSMg01no180_p21.g1)
ACCAG374309AG374310
length749751
length of high quality
(start - end)
587 (32 - 618)288 (62 - 349)
definitionCHROMAT_FILE: MSMg01no180_p21.b1 PHD_FILE: MSMg01no180_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:22 2005CHROMAT_FILE: MSMg01no180_p21.g1 PHD_FILE: MSMg01no180_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,033,799 - 38,034,380)(37,892,041 - 37,892,328)
sequence
GCCGCTAAACGACTCACTATATTCAGAGAGACCGCGGAATTCACTACTTG
TCCCTTGCTATGACAACACCATCAAATGCTGTCTTCCCTATGCCTCTCCA
AAGCAAATCAGGCCAATTGTCATAAACTAGTAATAAACTTCATTTGTAAC
ACGGATAGCAGGAGCACAGATCTTTTTTTTCTAGAGTCCTGAGAAAGTAA
AACAAACTTATTCTGGTCTCTTTCTGTAATTGGTGCCTGTCTTGGCTTTT
AGAGCCATGTTTATTTATTGCTATTGAGACAAATCCCCAGGGAAATAATG
GGAATGACTGATAATTCATTAACTAACTGGTCAGGACTTCTTATCTTTTC
TTCGCTGCCTCATTACTGAAATCAGAAATAACTGACAGCGGACGGAAGAC
CTACCCAGCACTCTGATGGTAATAGGAAACTTATTGACCTAAATGCCGGC
TTTTAAGCAATACTCTAGAGAAGGACCTATCTGGTGCTTATCTGATTTAC
CAGTTTCAAAATTTGAACCACTGAATGGACTTTCTGCTTAATATCATATA
TCAATCACCTCTCCCTAAATATACCTGAATGAGTTCATTGAACCTGTTTT
CTCATTGTTTCTAGGCAGATTCATTAAGCCTATATTTTTATTATGATCAC
AAAAACTATGCTTTATGAGAGAGATAACTTTTACATCACATTTTATCGTA
TGAAAGGTTTAAAACCTGTTTTAAGCCACAGTTAGCCATTGCAATATTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCACCCAGTACATTGTTCCTCATCTTATTGTAGGACATGG
CAGACTAGGATCGCCTTTCTGGGACATGGAAATCTCATCTTCTCATTTAA
CCCAATTGTCCTGGTTGGGAAATTTCTCAATTGTTTATGTGTTTCTCCTT
AGTACAGAAAACACACAAGAATGTGAATCAGCCTAAAGAAAAAGCTGTTG
CAGGATTTAGGCAACATACACAAATATTATGTAAAGCAGTCAATTCACCA
GAAGGATTTTCATGTCTTACTCTCAAGGAACACATTGACTATGTAGATTG
TTTTTTATTAATGTCCTATTATCCTAGAAAGCTCACTATATCTTGTTCGG
AGAGCCACTTCCACAAAATCACCAGACATTTGTAAATCTCTTTAAAAAGG
TTAACAACAACAACAACAACAACAACAAAAAACCTTTAAAACTGACTTAG
TTAAATCCTAAGTGAGAGAACACATAGCCTTATACACTGCAGTCATAAAT
AAAACATACCTATTTTTAGAAAATGCTAGGAATGATTTATACATTCATGG
TGCTTTGTTTTATGAAAGCGGCATGTGTTCTAGATTTCTGTTATTTTTCA
AAAGTTAATCTAAGTGCAGCACTATAATTAAATAGAATTACATAGAGAAT
GTGTGAAGAAAAGACAAAGTATGTGGACATATAAAGTGTCACTTTCTGAA
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_p21.b1 MSMg01no180_p21.b1 CHROMAT_FILE:
MSMg01no180_p21.b1 PHD_FILE: MSMg01no180_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:22 2005
         (587 letters)



>mm_chr8_38033594_38034580
          Length = 987

 Score = 1064 bits (550), Expect = 0.0
 Identities = 574/582 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcactacttgtcccttgctatgacaacaccatcaaatgctgtcttccctatgcctc 65
           |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 gaattcactacttgacagttgctatgacaacaccatcaaatgctgtcttccctatgcctc 728

                                                                       
Query: 66  tccaaagcaaatcaggccaattgtcataaactagtaataaacttcatttgtaacacggat 125
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tccaaagcaaatcagggtaattgtcataaactagtaataaacttcatttgtaacacggat 668

                                                                       
Query: 126 agcaggagcacagatcttttttttctagagtcctgagaaagtaaaacaaacttattctgg 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 agcaggagcacagatcttttttttctagagtcctgagaaagtaaaacaaacttattctgg 608

                                                                       
Query: 186 tctctttctgtaattggtgcctgtcttggcttttagagccatgtttatttattgctattg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tctctttctgtaattggtgcctgtcttggcttttagagccatgtttatttattgctattg 548

                                                                       
Query: 246 agacaaatccccagggaaataatgggaatgactgataattcattaactaactggtcagga 305
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 547 agacaaatccccagggaaataatgggaatgactgagaattcattaactaactggtcagga 488

                                                                       
Query: 306 cttcttatcttttcttcgctgcctcattactgaaatcagaaataactgacagcggacgga 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 cttcttatcttttcttcgctgcctcattactgaaatcagaaataactgacagcggacgga 428

                                                                       
Query: 366 agacctacccagcactctgatggtaataggaaacttattgacctaaatgccggcttttaa 425
           ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 agacctagcaagcactctgatggtaataggaaacttattgacctaaatgccggcttttaa 368

                                                                       
Query: 426 gcaatactctagagaaggacctatctggtgcttatctgatttaccagtttcaaaatttga 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gcaatactctagagaaggacctatctggtgcttatctgatttaccagtttcaaaatttga 308

                                                                       
Query: 486 accactgaatggactttctgcttaatatcatatatcaatcacctctccctaaatatacct 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 accactgaatggactttctgcttaatatcatatatcaatcacctctccctaaatatacct 248

                                                     
Query: 546 gaatgagttcattgaacctgttttctcattgtttctaggcag 587
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gaatgagttcattgaacctgttttctcattgtttctaggcag 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no180_p21.g1 MSMg01no180_p21.g1 CHROMAT_FILE:
MSMg01no180_p21.g1 PHD_FILE: MSMg01no180_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:22 2005
         (288 letters)



>mm_chr8_37891841_37892528
          Length = 688

 Score =  526 bits (272), Expect = e-154
 Identities = 284/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacccagtacattgttcctcatcttattgtaggacatggcagactaggatcgcctttctg 60
           |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 201 cacccagtacattgttcctcatcttattgtaggacatggcagacaaggatggcctttctg 260

                                                                       
Query: 61  ggacatggaaatctcatcttctcatttaacccaattgtcctggttgggaaatttctcaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggacatggaaatctcatcttctcatttaacccaattgtcctggttgggaaatttctcaat 320

                                                                       
Query: 121 tgtttatgtgtttctccttagtacagaaaacacacaagaatgtgaatcagcctaaagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtttatgtgtttctccttagtacagaaaacacacaagaatgtgaatcagcctaaagaaa 380

                                                                       
Query: 181 aagctgttgcaggatttaggcaacatacacaaatattatgtaaagcagtcaattcaccag 240
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 381 aagctgttgcaggatttaggcaacgcacacaaatattatgtaaagcagtcaattcaccag 440

                                                           
Query: 241 aaggattttcatgtcttactctcaaggaacacattgactatgtagatt 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaggattttcatgtcttactctcaaggaacacattgactatgtagatt 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)