BAC Information

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BAC

Clone NameMSMg01-181F15
Chromosome8 (Build37)
Map Location 52,096,126 - 52,096,457
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667495, LOC100039954, LOC100039966
Downstream geneLOC667517, LOC623872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181F15.T7 (MSMg01no181_f15.b1)MSMg01-181F15.TJ (MSMg01no181_f15.g1)
ACCAG374552AG374553
length716739
length of high quality
(start - end)
410 (69 - 478)579 (76 - 654)
definitionCHROMAT_FILE: MSMg01no181_f15.b1 PHD_FILE: MSMg01no181_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:48 2005CHROMAT_FILE: MSMg01no181_f15.g1 PHD_FILE: MSMg01no181_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGGCATAACCTTCAGATATCCAATCATTTGAGAGAAATTTGTAA
GCAACAGTAAAAAAAAATGATCTCGTCTACACATATCATTTCAGATATTT
TAGAAATATCTGATTCAGATAATTTAGAAAGCATAATTATTATTAAAAAA
ATAAGCTGATGAGGAGGGTGAACCTGTAAGAGGACCAGCAGTCTCAATTA
AACTGGACCCCACAAGATCTGTCAGACACTGGACCACCAACCAGGCAACA
TTCACCAGCTGATATGAGGCCTCCGACACATATACAGTAGAGAACTGCTA
GGTTTGTGTTCATTCAGAGAAGATGCACCTAACCCTCAAAAGACTGCCAG
ACCCAGGGAGTTTAGGGGTCTGGTTGGGTGGGGGTGGAAACATCCAAGTG
GAGACAGAGGGTGGGTGAGAGGGGGGTTXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAATGCTTCTGTACTC
AGTGTGATTCGCCCTA
GAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGCTCACACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAATTTCAGGTGACTGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATC
CAGCAATACCACTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCAAAACCTAAGATACCCAAGATATAAGATACAATTTGC
TAAACACATGATACTCAAGAAAAATGAAGACTGAAGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_f15.b1 MSMg01no181_f15.b1 CHROMAT_FILE:
MSMg01no181_f15.b1 PHD_FILE: MSMg01no181_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:48 2005
         (410 letters)



>mm_chr8_52096126_52096936
          Length = 811

 Score =  609 bits (315), Expect = e-179
 Identities = 328/333 (98%), Gaps = 4/333 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagatatccaatcatttgagagaaatttgtaagcaacagt--aaaaaaaaatgatctcgt 58
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||| | ||
Sbjct: 332 cagatatccaatcatttgagagaaatttgtaagcaacagtaaaaaaaaaaatgatat-gt 274

                                                                       
Query: 59  ctacacatatcatttcagatattttagaaatatctgattcagataatttagaaagcataa 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ctacacatatcatttcagatattttagaaatatctgattcagataatttagaaagcataa 214

                                                                       
Query: 119 ttattattaaaaa-aataagctgatgaggagggtgaacctgtaagaggaccagcagtctc 177
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ttattattaaaaataataagctgatgaggagggtgaacctgtaagaggaccagcagtctc 154

                                                                       
Query: 178 aattaaactggaccccacaagatctgtcagacactggaccaccaaccaggcaacattcac 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 aattaaactggaccccacaagatctgtcagacactggaccaccaaccaggcaacattcac 94

                                                                       
Query: 238 cagctgatatgaggcctccgacacatatacagtagagaactgctaggtttgtgttcattc 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  cagctgatatgaggcctccgacacatatacagtagagaactgctaggtttgtgttcattc 34

                                            
Query: 298 agagaagatgcacctaaccctcaaaagactgcc 330
           |||||||||||||||||||||||||||||||||
Sbjct: 33  agagaagatgcacctaaccctcaaaagactgcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 811
Length adjustment: 9
Effective length of query: 401
Effective length of database: 802
Effective search space:   321602
Effective search space used:   321602
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)