BAC Information

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BAC

Clone NameMSMg01-182D08
Chromosome8 (Build37)
Map Location 119,063,474 - 119,063,781
singlet/doubletsinglet
Overlap genenone
Upstream geneMaf, LOC384868, LOC668233, Dynlrb2
Downstream geneCdyl2, LOC100043053, 2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2, Bcmo1, Gan, 4933407C03Rik, Plcg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182D08.T7 (MSMg01no182_d08.b1)MSMg01-182D08.TJ (MSMg01no182_d08.g1)
ACCAG375156AG375157
length752706
length of high quality
(start - end)
261 (73 - 333)312 (44 - 355)
definitionCHROMAT_FILE: MSMg01no182_d08.b1 PHD_FILE: MSMg01no182_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:53 2005CHROMAT_FILE: MSMg01no182_d08.g1 PHD_FILE: MSMg01no182_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTGGGGATTGCTTTGAGGTGGGACGAC
CCTCCCACTATGGGCAGCACCATTCCCTAGGCTTTATAGATGGAGAAAGA
GAGGTGAAGCACTACATGTTCATTGCTCTCTGCTTCCTGATTAGCTGCTC
AGGCTCCTGCTGCCTTGATTTTCATGACATATTTAAACTTGGAGACAAAA
AGAAACTCTTTCCCCCTGGGTTGATTTTGTCAGGATATTTTATCGCATAC
AGCAAGAGGGAAAAAAAAAGACTCCTACGTGCGCCTGGGGCAGGTGCTGT
GTACGATCTAGATTCCACATGGGACAGAAATGCGATGTTTGCCTTTTTAA
GTCTTTATAGGACCCACCCCCCGCTGAAGATTGATATCCTGTACTCATAT
AGTATGTACAAGCCAAGAGTATTTTATTTCCACATTGTCTAGCATGCTGC
GGTCTCCCACTACCAAGATAGTTAGTCTAACTAGTCGAGCTCCGCCTGTC
CTGATTTATATCTCCTTCCTGCCCTTTTGCCTTTATTTGCCCCCCCCTTC
TCAACTTCTTGCCTTCCCCCTTCTATCGCACATTTTTTTTTCTTTTTCCT
GCCTCTCGCCTTTTTCCGCCCCTTTTCCCTCCCCCCCCATTATTTTTTTC
CTTTTCTCCCCCCCTTTTTTTTTTTTTTACCCCTCTCCTCTCCCTCTCTT
CC
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGGTCTACAGAAAGTCAAAGCATGTGTTTTCCCCACCTTTCTACATT
CCTATTGGGTCTAGAGATGCCTTGCGTGGCTTTACAGTGGTAGGTGACAA
TCCAGCTCATGGTGATGACGTCATCAGTTCAGCTTTGAACGTGGCTCTCT
GTTACATTGTAGCAGTGGGGTCTTGGGCAAGTTGCTTAAAACTGTTCAAA
AACTGCTTTGCATTTGGTCTTCCCTGTGCATAGATAAGGATGGCAATTAG
ACTTATAATGAGGTTCCCGGAACTCACAGATAGGGCTCATGTTTGTCAAA
GCATGATTTTCATGGAACATCCATAGGAACTTGGATTTGCTCTTCCAGGC
TTATCCTCAACACCCCCAGGACTCTTGGAACCACAACTCTGTCCATGCTC
TGTGCTGGGCAGGTTCTCGGTGCCAGATGTTGCAGGGATTACCAGCATCC
CTGACTCCTTCCCACTAAATGCCATCAAGAACAACCAAAAATGTCTATGT
AGCTGCCAACCATCCCACCTTATCCCCACTGACGCCACAGAATGGGTTAA
GTTGTCTCCGCTGGAAATTTTCTCTCCGAGGTACCGCCAATGTTGCACCG
GTTATTTGCCCACCTCCACTCTTTTACAAAGTATGAGATGGTCCTCTTAC
AAAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_d08.g1 MSMg01no182_d08.g1 CHROMAT_FILE:
MSMg01no182_d08.g1 PHD_FILE: MSMg01no182_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:53 2005
         (312 letters)



>mm_chr8_119063270_119063981
          Length = 712

 Score =  565 bits (292), Expect = e-165
 Identities = 304/308 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaggtctacagaaagtcaaagcatgtgttttccccacctttctacattcctattg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gaattcaggtctacagaaagtcaaagcatgtgttttccccacctttctacattcctattg 453

                                                                       
Query: 65  ggtctagagatgccttgcgtggctttacagtggtaggtgacaatccagctcatggtgatg 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ggtctagagatgctttgcgtggctttacagtggtaggtgacaatccagctcatggtgatg 393

                                                                       
Query: 125 acgtcatcagttcagctttgaacgtggctctctgttacattgtagcagtggggtcttggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 acgtcatcagttcagctttgaacgtggctctctgttacattgtagcagtggggtcttggg 333

                                                                       
Query: 185 caagttgcttaaaactgttcaaaaactgctttgcatttggtcttccctgtgcatagataa 244
           ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 332 caagttgtttaaaactgttcaaaaactgctttgcatttgggcttccctgtgcatagataa 273

                                                                       
Query: 245 ggatggcaattagacttataatgaggttcccggaactcacagatagggctcatgtttgtc 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 272 ggatggcaattagacttataatgaggttcccagaactcacagatagggctcatgtttgtc 213

                   
Query: 305 aaagcatg 312
           ||||||||
Sbjct: 212 aaagcatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)