BAC Information

Click to search

BAC

Clone NameMSMg01-182F13
Chromosome8 (Build37)
Map Location 25,514,615 - 25,514,762
singlet/doubletsinglet
Overlap genenone
Upstream geneSfrp1, LOC100040931, Zmat4
Downstream gene1810011O10Rik, Indol1, Indo, Adam18, Adam3, Adam5, Adam32, Adam9, Tm2d2, Htra4, Plekha2, LOC100042390, Tacc1, LOC670822
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182F13.T7 (MSMg01no182_f13.b1)MSMg01-182F13.TJ (MSMg01no182_f13.g1)
ACCAG375253AG375254
length730761
length of high quality
(start - end)
148 (43 - 190)32 (72 - 103)
definitionCHROMAT_FILE: MSMg01no182_f13.b1 PHD_FILE: MSMg01no182_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:04 2005CHROMAT_FILE: MSMg01no182_f13.g1 PHD_FILE: MSMg01no182_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTTTCTAAGAGGATCCGCGGAATTCAGAATGTTCCAGATCTCATGAGT
TTATGAAATGAAATGGTTTCTGCTGGGGGAAGGATGATAAGCCCAAGTTG
GTTAATGTATACAATGTATAAGATGCTGTATAATAAACAGAGGTTGCTCA
TACCTCTTTACTGATACTCTACACGGCTACAGAGTAAAGCAACGTGAACA
GAGCCTATGTGTTTTCTATATGTGCTTATCTACAATTAAGCAACATTCGT
AAGTTATACTTATTACCCATTATATAAACCATACCATACTATTTTTTTAT
GATCATCATCCCCGTCGTATACCACTAATTATTTTTCGTCCCCTTTCTCC
CTTATAAATAATGATGTATGTTTTTTTTTTTTTTTTTGGACCACCCCGAA
NTTANNGAAAGTATATATTATTATATAATACTTTTACTAGAAAATTTGAT
TTAGATTATCGGTATCTTTTATTAGTCACTATATTTTTCATTTTTTTTTC
CCGTACACCACACTATTTTCTAAATTTTTTAAATGCCCCCTAAACTACCT
ATTATTTTCTTTTTCTTTCTCTTTTTGGCACAATATCATAATATTTTTTA
TACTCGATCACCACATTTCCCCTTCAAAGCAAATTATACTTTATGATCCC
CAGGTTCTTCATATCTTTTCCTCATTCTCACTTCTCCTTTTTTCCCTTCC
CCCCCCTTTCTATCCTCCCTATTTTTTTCC
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATCTATTATTAGTGGGTTGATATTGGTTT
GTGNCTTGAATTCCAGCCGACACTTTTTATGAAATTCAGCGCACCAGAGT
CTGGTGCGTATATATTTAGAACTGTCCTATTGCGCCTGCTTACCTGTCTT
TCTAATCTTGTTTAAGAAGACACACGCACCTGCGTGTTACGACGATTATT
CTTGCCCCCGCTCTCATACTTCTAACAGTCCACTCACACTTCAGCGTCCC
GTAAATATATATATTTTTTTTTTTATGACCCAACAACATAGAGAGAACAA
ATTTTTTTATAATTCCCCCAGAACAAGGCCCCCGGCATTGTATTATTTTT
TTTGATGGAATGGTTCTCCCCACCCCACAAAAAAAAAAAAATTATTTGGG
CGGGGGCGTGCACTACATATTAACTAAATCCCACTACTTTCCTTTTTTTT
TTCTACTTTATTCTCCACTCCCATCCCTCCCTTCATTTTTTTTTTCTCCC
CCCCCTCCCTTTTGTGCCATTTTTCCCCGTTCATTCTTCACACCCCTCAT
TTTACCTCTTTTTTTCCCTCACCATTTTTGGTTTCTTCCCAATATGCCCT
CCCCTATCTTTTCCCCATTCCCCTTCCCCCCTCCTTTCTCCTTCCACTTC
TTTACTTCTTTTCCCTTTTCCCCCGATTCCCTTTTTCACTTCCTTTATTC
CCCTCCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_f13.b1 MSMg01no182_f13.b1 CHROMAT_FILE:
MSMg01no182_f13.b1 PHD_FILE: MSMg01no182_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:04 2005
         (148 letters)



>mm_chr8_25514415_25514962
          Length = 548

 Score =  263 bits (136), Expect = 3e-75
 Identities = 145/148 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatgagtttatgaaatgaaatggtttctgctgggggaaggatgataagcccaagttggt 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||
Sbjct: 348 tcatgagtttatgaaatgaaatggtttctgctgggggaaggatgagaagcaaaagttggt 289

                                                                       
Query: 61  taatgtatacaatgtataagatgctgtataataaacagaggttgctcatacctctttact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 taatgtatacaatgtataagatgctgtataataaacagaggttgctcatacctctttact 229

                                       
Query: 121 gatactctacacggctacagagtaaagc 148
           ||||||||||||||||||||||||||||
Sbjct: 228 gatactctacacggctacagagtaaagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 548
Length adjustment: 8
Effective length of query: 140
Effective length of database: 540
Effective search space:    75600
Effective search space used:    75600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)