BAC Information

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BAC

Clone NameMSMg01-182I24
Chromosome8 (Build37)
Map Location 36,140,223 - 36,287,883
singlet/doubletdoublet
Overlap geneLOC666797, LOC666804
Upstream geneDctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159, LOC666746, Dusp4, LOC675578, Tnks, LOC666792
Downstream genePpp1r3b, Thex1, Mfhas1, LOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e, Lonrf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182I24.T7 (MSMg01no182_i24.b1)MSMg01-182I24.TJ (MSMg01no182_i24.g1)
ACCAG375409AG375410
length725782
length of high quality
(start - end)		367 (46 - 412)141 (73 - 213)
definitionCHROMAT_FILE: MSMg01no182_i24.b1 PHD_FILE: MSMg01no182_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:20 2005CHROMAT_FILE: MSMg01no182_i24.g1 PHD_FILE: MSMg01no182_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,140,223 - 36,140,585)(36,287,743 - 36,287,883)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTTCCTGCATTAGATGTTTGGCATGGCATACAGTTTGCTTCCCC
TTCCTTCTCATGTTTTCTCCCTCTCATCCCCGCCCCCATATCGCCCCACC
AGCACCACCACCAATAGTTTTCTTGCCAGAAGAACTGTTTCTCAATATTT
ATATTTTGTAACATTCGAATTTTGAAAGAAACCGAGAAGTTATCCCACAG
AACATTTTTTTCCCCTGATTTCTTCCTTATAGTTTTCTGTTACACACTGA
TGTCCTGTCCACAGGGCACAGAATCAGGAGACACAAACAACACCTCTGCC
CCCGTTACCATTTGCTTAACAATTCACCTTTGCTTGAATAATCTGAATGT
CCCTTGTGCTCTACCACCCCGCAGCATCGTTTGGTTCTACGTGGCACTGC
TACTGGTCTGCTCTGTGGGAAGCACCTTGCTGGTTTTTTGTTTGTTTGTT
TGTTTGCTTCCTCTTCCCTTCACTTTTCCCCTATTCTTATTTTTACTCTC
CATCGTATCCTTCCCCTCCCCTCCCTACTTTTATCTCTTTCCTTACATTA
ACTCAATAAATAATTCTCCTTCCTCCTCTACTTACACAACCATACAAATT
ATTGCTTTTATACTTTCATCTTCTAACTCCCTTTTCCTCTTATTATTATA
TTTTTAATCACCCTTATTTACAAAC

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATCCCAACAGGGGGCTCCACTATGGGTC
CGTGCCGTGCACAGCGCCTGGACCTCAAGAGAAGAGAAACGGAGTGGGGA
GAGGAAGAGAACTGTTGGCACCTTGTGGGAGGGAATAGAGAGCAGAGGAG
AGGAGGACTGAAAACACTGGACAGAAAATGGTTAAGGCCGCGCGAGGGCT
GAGGGATGTGGTTATTAATCCGTGTCGCGGCGAAAAATCAACTTTTTGTT
TCTTCCGGGTGCCGTATTCTCTTTTTCTGACCCCATTGTGTGTCCATCCT
TCCACTCTACCTGTTTGTACACTATTGGGATTCAACATTTGGTCCAATGG
GTGGGGACACAGGGGGCAACACCCCCCCGCCATTGCGAGCCCCCTACGGG
GGCTTAGTTCCGTCCCACCCTCCCCCTTATATCAATTTCCCCTTTGGTCG
TTTACACACACCCCATTAACCCTTTTGTTGATCCACAATATGTGGTCCAC
CCCCTTTCTCTTTCATTTTATCCACACCATATGGTGTCAACATACCATTC
CGTTTTCTTTTCCCCCCCTTTCCCCCATCGTCTTTTCGCCCCCCCCCCGT
TCCTCTTTTTGCCCCCCCTTTTTTTTTTCTTTTTCACCCCCTGGTTTAAA
AATTTCTCGCCCCTTCTTTTATATCTTTATAATTGGCAAATATAAGCGTA
GGGCTCGCTTACCCTCCCCCCTTTTCCGGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_i24.b1 MSMg01no182_i24.b1 CHROMAT_FILE:
MSMg01no182_i24.b1 PHD_FILE: MSMg01no182_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:20 2005
         (367 letters)



>mm_chr8_36140019_36140785
          Length = 767

 Score =  694 bits (359), Expect = 0.0
 Identities = 362/363 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctttcctgcattagatgtttggcatggcatacagtttgcttccccttccttctc 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctttcctgtattagatgtttggcatggcatacagtttgcttccccttccttctc 264

                                                                       
Query: 65  atgttttctccctctcatccccgcccccatatcgccccaccagcaccaccaccaatagtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgttttctccctctcatccccgcccccatatcgccccaccagcaccaccaccaatagtt 324

                                                                       
Query: 125 ttcttgccagaagaactgtttctcaatatttatattttgtaacattcgaattttgaaaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcttgccagaagaactgtttctcaatatttatattttgtaacattcgaattttgaaaga 384

                                                                       
Query: 185 aaccgagaagttatcccacagaacatttttttcccctgatttcttccttatagttttctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaccgagaagttatcccacagaacatttttttcccctgatttcttccttatagttttctg 444

                                                                       
Query: 245 ttacacactgatgtcctgtccacagggcacagaatcaggagacacaaacaacacctctgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttacacactgatgtcctgtccacagggcacagaatcaggagacacaaacaacacctctgc 504

                                                                       
Query: 305 ccccgttaccatttgcttaacaattcacctttgcttgaataatctgaatgtcccttgtgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccccgttaccatttgcttaacaattcacctttgcttgaataatctgaatgtcccttgtgc 564

              
Query: 365 tct 367
           |||
Sbjct: 565 tct 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no182_i24.g1 MSMg01no182_i24.g1 CHROMAT_FILE:
MSMg01no182_i24.g1 PHD_FILE: MSMg01no182_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:20 2005
         (141 letters)



>mm_chr8_36287543_36288083
          Length = 541

 Score =  273 bits (141), Expect = 4e-78
 Identities = 141/141 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcccaacagggggctccactatgggtccgtgccgtgcacagcgcctggacctcaagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 atcccaacagggggctccactatgggtccgtgccgtgcacagcgcctggacctcaagaga 282

                                                                       
Query: 61  agagaaacggagtggggagaggaagagaactgttggcaccttgtgggagggaatagagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 agagaaacggagtggggagaggaagagaactgttggcaccttgtgggagggaatagagag 222

                                
Query: 121 cagaggagaggaggactgaaa 141
           |||||||||||||||||||||
Sbjct: 221 cagaggagaggaggactgaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 541
Length adjustment: 8
Effective length of query: 133
Effective length of database: 533
Effective search space:    70889
Effective search space used:    70889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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