BAC Information

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BAC

Clone NameMSMg01-182N05
Chromosome8 (Build37)
Map Location 49,645,755 - 49,646,099
singlet/doubletsinglet
Overlap geneOdz3
Upstream geneLOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2, LOC100040113, Dctd
Downstream gene2900073C17Rik, LOC100039866, 4930555F03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182N05.T7 (MSMg01no182_n05.b1)MSMg01-182N05.TJ (MSMg01no182_n05.g1)
ACCAG375599AG375600
length802714
length of high quality
(start - end)
356 (106 - 461)280 (71 - 350)
definitionCHROMAT_FILE: MSMg01no182_n05.b1 PHD_FILE: MSMg01no182_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:41 2005CHROMAT_FILE: MSMg01no182_n05.g1 PHD_FILE: MSMg01no182_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTTCTCCCTCACACTTTGTTTTCTTCCCTCCCNNNNNNNNNTTTATTA
NAANAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCACAGGCATGCTACCTAGTTTTCCTTTCTTTCTTTTT
TTTTTTTTTTTTTTTTTGACATGAACTGCAGTGGTCCTAAGGCCAGTGTT
TTGTGGCATGGGAAAGGGAGTGGCTGAGAATAAACAGTCCAGATTGAGGG
CATTGCTGCTCGACCGGAGTCGCTTAGTTAACGTTTATTTATCACATCGG
TATTTATGAAACTTGAACTGTCAGAGAATACATACAAATATGCCTCCAGG
AGGTATTCCTATCTGCAAGACCTGAAATTTTATGTGAGCCCCAGTAGGCT
GCTCCGCTTGAATAGACAGACAGTGCCATCCCTGGGTGGGCCTGGGAATT
AGTATTGCTGTCTGTACTCATCCCCCCCCAAATGAACAGTGTGGTCCTTC
CGCCTCTCCTCTTCCTCCCCACTGCACTTCCAGAGGCCGGTAGTTCACAG
ATGATATAAGGTTTTATACGCCTTGGAACTGGAGACTCCCTTTTAATGTT
GTATTTTGGTAGGTGGTTGTCTATTAATCCTCTCCTCTCTCGCTTGTCCC
CCTCTATCCGAGATTTTTTTCTTTCGGTAATACTTCTTCGCTCACCAACA
TGGAAATTGATTATCCGGGAATGAATTGTTAAAAATCATCCTTTATCCCC
CTTACTCTTTTTTCCGCCCCTCCCCCTTTCCTTTCTCCCCTTTTTTTTTC
TA
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAGGCTCAATTCATCAGACCTGGGCAAGCT
TAAATATCTTACTGGTTTATGGCATTATATTTTTAGTTTCCTTCCTTCCT
CCCTCCGTCCCTCCGTCCCTCCGTCCCTCCGTCCCTCCGTCCCTCCGTCC
CTCCGTCCCTCCCTCCCTCCCTCCCTTCCTTCCTTCCCTCCCTCCCTTCC
TTTAAGCTTTCAATATCCTTACATTTTTGTTCTCTTTAACCTTTGGGTTC
TTCTCTTAAGAAGGTTGCCATAATTGGCTTCATTTCTAATGTTGTTGTTA
TATTTATTTATCTGCCCTGCGGCTGCACCGCCCTTTTCAACCTAATGGGG
CTCCCGACGCCCCCCGATTTCTATTCTGAATTTCTAGAATCTGTATCTCC
ACACATCTCTGCAGCATCTATCAGTGGTGCATCTTCACTCATAAAAGACT
TCCTTAGTTGGTTCTCTATTCTCATATGACCACTTGGATTTCTGAACCTT
GTTTCCAGCCTATCGTTTTCTTCTTTTGTAATGTATAATTTTTTCTTGCC
CTTCCCCCCCTACCCAACTTTTTCATTTCCCTTTTTCAACCCTTTTTGTC
AGCTTCTTTCTTCTTTATCGTTTTGACATTTCCACTTTTTCCTTCCATCT
TACCCAGTCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_n05.b1 MSMg01no182_n05.b1 CHROMAT_FILE:
MSMg01no182_n05.b1 PHD_FILE: MSMg01no182_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:41 2005
         (356 letters)



>mm_chr8_49645493_49646248
          Length = 756

 Score =  634 bits (328), Expect = 0.0
 Identities = 343/352 (97%), Gaps = 7/352 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcacaggcatgctacctagttttcctttctttcttttttttttttttttttttttg 63
           ||||||||||||||||||||||||||| |||||||||       ||||||||||||||||
Sbjct: 607 gaattcacaggcatgctacctagtttttctttctttc-------tttttttttttttttg 555

                                                                       
Query: 64  acatgaactgcagtggtcctaaggccagtgttttgtggcatgggaaagggagtggctgag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 acatgaactgcagtggtcctaaggccagtgttttgtggcatgggaaagggagtggctgag 495

                                                                       
Query: 124 aataaacagtccagattgagggcattgctgctcgaccggagtcgcttagttaacgtttat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aataaacagtccagattgagggcattgctgctcgaccggagtcgcttagttaacgtttat 435

                                                                       
Query: 184 ttatcacatcggtatttatgaaacttgaactgtcagagaatacatacaaatatgcctcca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ttatcacatcggtatttatgaaacttgaactgtcagagaatacatacaaatatgcctcca 375

                                                                       
Query: 244 ggaggtattcctatctgcaagacctgaaattttatgtgagccccagtaggctgctccgct 303
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 374 ggaggtattcctatctgcaagacctgaaattttaggtgagccccagtaggctgctccgct 315

                                                               
Query: 304 tgaatagacagacagtgccatccctgggtgggcctgggaattagtattgctg 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tgaatagacagacagtgccatccctgggtgggcctgggaattagtattgctg 263


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space:   259209
Effective search space used:   259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)