BAC Information

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BAC

Clone NameMSMg01-183B19
Chromosome8 (Build37)
Map Location 63,441,108 - 63,543,062
singlet/doubletdoublet
Overlap geneClcn3, B230317F23Rik, Nek1
Upstream geneAadat, Mfap3l, LOC100040679, 2700029M09Rik
Downstream geneSh3rf1, EG664975, Cbr4, Palld, LOC100040872, BC013672, Anxa10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183B19.T7 (MSMg01no183_b19.b1)MSMg01-183B19.TJ (MSMg01no183_b19.g1)
ACCAG375803AG375804
length720748
length of high quality
(start - end)		675 (46 - 720)667 (71 - 737)
definitionCHROMAT_FILE: MSMg01no183_b19.b1 PHD_FILE: MSMg01no183_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:02 2005CHROMAT_FILE: MSMg01no183_b19.g1 PHD_FILE: MSMg01no183_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,441,108 - 63,441,778)(63,542,396 - 63,543,062)
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGTCCTCCCCGCATTTGATGATGAACTGTTATATAAACTGTGAG
TGAAATAAATGCTTTCGTCCCAAGCGGCTTTTGATTGTCATGTTTCATCA
CAATAATAGTGACCCTAAGTAAGACACCACCTATTACAACAGGCTGATTA
AAGACGGACTAGTGGTGCAAAACAGGGAAAGGGGACTTGGCCATGATAAA
TGCTGAAGGGACCCCACACTTCTGGCAGCCATGAGCATCTACACTCACAC
TCACATAGCAACAAAGGCATATAATGAAACGTAAAGATAAAATTATTAAA
AACGTCTAAACCAGCCTTTACCAAGGATTTCCAACGTAAGACTTGTGACT
TTATGTTGCAATTTGACTTTAGACTGTTTCGTGGTCCCAAACATCTCCCT
CAGTAGAGCAGTACCACCAAGTACTGGGAAACGACAAGTAAAGCAATGCA
GCTGAAAGCTTAGCCTTCAAACTGCCAAGAAAAATGATTCTAGCTCAAAT
TTGTATCTTAGATTCCTGAGCAACACCACCACATCTCCTCCCTTCCCCTC
CACCCCACCCCCATCTACAATAAAAACTTTAACCCTTAACCATATCACGG
GGGTAGTCAGGTCAGCAGCTTTCTTTACTACACACCCTTACATGCATCTG
GTCCATTTGGGGAAGTGGAG

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCAGGGAGATCATTACATATAGTAAGAAAC
AACTAAGGATTTAGTCCCCAAGAAGATTAGCATGTAAAGACTGAGAAAAA
ATAACAACTACATAAAAGAACATGCTAAGAGACTGTAAGCAGAGAAGTAC
AGCAGAAACTGCAGAAGATAAGGAAGAAATTTTATAGCTCATGCTCAGGT
GTCATAGAAAGATCAAGTAAGATGAGGATCACAAAGCTCTGTTTGGGCTG
GCGGTAGAGCTCAATGATTATTATTTAGCTCATGGGAAGTCCTCGGCTCA
TACCACAAAAGGAATCAAATAGAAACAACAAAACAGCATAAGTTTGAGAG
AATGGGTACAGTGACTTCTTTCAATATGCTGATGTGGTGACAACTGTTTA
CAGCTGAAATAACAGGTAAGGAACTGAAAACAAATGAACTTCATTCACGT
TTCAAGAGTCTGGCTACGTTGTAGTTAATGATGAGAGAAACAGAAATGTA
ATTATAGGTTTTAGGAAAGTATGATTAAAGAAGGTCTGTTAAGAAGGGAT
AGTGCATAATTATTATGATAAGGACCCCAAATAATGACAGAATGCCATCA
AAGATAACAAAATGCTCAAAGTGCAAATCGTAAATGTCTCAAGCATAATT
GTCACAGCTTTGATTCTCTCCAGTGCTGTTTGAAGGTATAATCACAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_b19.b1 MSMg01no183_b19.b1 CHROMAT_FILE:
MSMg01no183_b19.b1 PHD_FILE: MSMg01no183_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:02 2005
         (675 letters)



>mm_chr8_63440904_63441978
          Length = 1075

 Score = 1259 bits (651), Expect = 0.0
 Identities = 666/671 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgtcctccccgcatttgatgatgaactgttatataaactgtgagtgaaataaa 64
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgtcctccctgcttttgatgatgaactgttatataaactgtgagtgaaataaa 264

                                                                       
Query: 65  tgctttcgtcccaagcggcttttgattgtcatgtttcatcacaataatagtgaccctaag 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgctttcgtcccaagtggcttttgattgtcatgtttcatcacaataatagtgaccctaag 324

                                                                       
Query: 125 taagacaccacctattacaacaggctgattaaagacggactagtggtgcaaaacagggaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taagacaccacctattacaacaggctgattaaagacggactagtggtgcaaaacagggaa 384

                                                                       
Query: 185 aggggacttggccatgataaatgctgaagggaccccacacttctggcagccatgagcatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggggacttggccatgataaatgctgaagggaccccacacttctggcagccatgagcatc 444

                                                                       
Query: 245 tacactcacactcacatagcaacaaaggcatataatgaaacgtaaagataaaattattaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tacactcacactcacatagcaacaaaggcatataatgaaacgtaaagataaaattattaa 504

                                                                       
Query: 305 aaacgtctaaaccagcctttaccaaggatttccaacgtaagacttgtgactttatgttgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaacgtctaaaccagcctttaccaaggatttccaacgtaagacttgtgactttatgttgc 564

                                                                       
Query: 365 aatttgactttagactgtttcgtggtcccaaacatctccctcagtagagcagtaccacca 424
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatttgactttagaatgtttcgtggtcccaaacatctccctcagtagagcagtaccacca 624

                                                                       
Query: 425 agtactgggaaacgacaagtaaagcaatgcagctgaaagcttagccttcaaactgccaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agtactgggaaacgacaagtaaagcaatgcagctgaaagcttagccttcaaactgccaag 684

                                                                       
Query: 485 aaaaatgattctagctcaaatttgtatcttagattcctgagcaacaccaccacatctcct 544
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taaaatgattctagctcaaatttgtatcttagattcctgagcaacaccaccacatctcct 744

                                                                       
Query: 545 cccttcccctccaccccacccccatctacaataaaaactttaacccttaaccatatcacg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cccttcccctccaccccacccccatctacaataaaaactttaacccttaaccatatcacg 804

                                                                       
Query: 605 ggggtagtcaggtcagcagctttctttactacacacccttacatgcatctggtccatttg 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ggggtagtcaggtcagcagctttctttactacacacccttacatgcatctggtccatttg 864

                      
Query: 665 gggaagtggag 675
           |||||||||||
Sbjct: 865 gggaagtggag 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no183_b19.g1 MSMg01no183_b19.g1 CHROMAT_FILE:
MSMg01no183_b19.g1 PHD_FILE: MSMg01no183_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:02 2005
         (667 letters)



>mm_chr8_63542196_63543262
          Length = 1067

 Score = 1243 bits (643), Expect = 0.0
 Identities = 661/667 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccagggagatcattacatatagtaagaaacaactaaggatttagtccccaagaagattag 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 867 ccagggagatcattacatatagtaagaaacaactaaggatttagtcccaaagaagattag 808

                                                                       
Query: 61  catgtaaagactgagaaaaaataacaactacataaaagaacatgctaagagactgtaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 catgtaaagactgagaaaaaataacaactacataaaagaacatgctaagagactgtaagc 748

                                                                       
Query: 121 agagaagtacagcagaaactgcagaagataaggaagaaattttatagctcatgctcaggt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 747 agagaagtacagcagaaactgcagaagataaggaagaaattttatagctcatgctcagat 688

                                                                       
Query: 181 gtcatagaaagatcaagtaagatgaggatcacaaagctctgtttgggctggcggtagagc 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 687 gtcatagaaagatcaagtaagatgaagatcacaaagctctgtttgggctggcggtagagc 628

                                                                       
Query: 241 tcaatgattattatttagctcatgggaagtcctcggctcataccacaaaaggaatcaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tcaatgattattatttagctcatgggaagtcctcggctcataccacaaaaggaatcaaat 568

                                                                       
Query: 301 agaaacaacaaaacagcataagtttgagagaatgggtacagtgacttctttcaatatgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 agaaacaacaaaacagcataagtttgagagaatgggtacagtgacttctttcaatatgct 508

                                                                       
Query: 361 gatgtggtgacaactgtttacagctgaaataacaggtaaggaactgaaaacaaatgaact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gatgtggtgacaactgtttacagctgaaataacaggtaaggaactgaaaacaaatgaact 448

                                                                       
Query: 421 tcattcacgtttcaagagtctggctacgttgtagttaatgatgagagaaacagaaatgta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tcattcacgtttcaagagtctggctacgttgtagttaatgatgagagaaacagaaatgta 388

                                                                       
Query: 481 attataggttttaggaaagtatgattaaagaaggtctgttaagaagggatagtgcataat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 attataggttttaggaaagtatgattaaagaaggtctgttaagaagggatagtgcataat 328

                                                                       
Query: 541 tattatgataaggaccccaaataatgacagaatgccatcaaagataacaaaatgctcaaa 600
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tattatcataaggaccccaaataatgacagaatgccatcaaagataacaaaatgctcaaa 268

                                                                       
Query: 601 gtgcaaatcgtaaatgtctcaagcataattgtcacagctttgattctctccagtgctgtt 660
           ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 267 gtgcaaatcgtaaatgtgtcaagcataactgtcacagctttgattctctccagtgctgtt 208

                  
Query: 661 tgaaggt 667
           |||||||
Sbjct: 207 tgaaggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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