BAC Information

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BAC

Clone NameMSMg01-183C20
Chromosome8 (Build37)
Map Location 103,283,284 - 103,283,558
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042069, LOC436054, LOC100042078, LOC100042086, LOC100042092, LOC384895
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183C20.T7 (MSMg01no183_c20.b1)MSMg01-183C20.TJ (MSMg01no183_c20.g1)
ACCAG375848AG375849
length737726
length of high quality
(start - end)
326 (42 - 367)279 (439 - 717)
definitionCHROMAT_FILE: MSMg01no183_c20.b1 PHD_FILE: MSMg01no183_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:07 2005CHROMAT_FILE: MSMg01no183_c20.g1 PHD_FILE: MSMg01no183_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCATCCATATAGCTGCAAAACTCATGATGTCTCTGTTTTTAATATTTGAT
TAGTATTCCACTGTGTGGATGCACCACATTTTCTTTATCCATTCTTCAGT
TCATTTACACCTACATTTTCTTCAGTTTCTACCCATTACAATAAAGTTGC
TATGAACATAGTTGAGCAACTGGTTTATATGGGGTGTGGTATCATCTTTT
GGGTATATGCCCACGAGAGTGATAGCTGGGTCTCAAGGTAGAACTATTCA
CAGTTTTCTGAGAAAATGTCAAATTGATTTCCAAAGTGGTTATATAAGAT
TGCATTCCCACCATATATGAAGAAGTGTTCCCTTTGCTCCACCTCCTTGC
CAGGATGTGCTATCTCTTGAGGTTTTGTTTTTGATTTTTTTTCCTTACTC
TTTCTAATGTGTGTAAGATGGAACCTCATAGTTGTTTTGATTTGCCTTTC
CCTGAAGACTAAAGACTTTTTACCATTTCTTTAAGTGCATCATGGCTACT
AGAGATTCTTCTGTTGAGAATTCTCTGTTTAGTTCTATACCCCATGTTTA
ATTCAGTTATTTGATTTGTTGGCTTATGTCTTTTTGAAAGCCTTGAACAA
TTTTGGTGTTTTTTTCTTCTACAGAATCAGGTATTATCTCTTTTTCTTCC
TCATTTCCGTCCTTTCTTTATGACCACTTTTTTTCTN
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCCGATGTTGTACAGTCAAGAAACAA
AGAGTCAGTTAGAGGTCACCTTTAACCTAAGATTAAGACTGTGCATTTCT
TCTACTGCATTTCAGATGTCTAGGGAGAAGAGGCTAGCATTTGTTTATTC
AAATGTATTCTCTATCTTGTAGTAAAATTATGAGGATATGTTTTAATCTA
TGAATATAAAGTAGGAATGATGATTATAAAAATAACTAACACTTAAATAT
CATTTAAGTAAACTTTAGAAGTAATGTTCATTCAAGTGCCCTCATAGGAT
GAAATTTTATGTCTTGTTATATGACTACCCCCCCCATGTACAATATTATA
ATTCAAGAGCATGAATACATTCCAGTCATTAGAAAGACACAGTGAATATA
GTTAATGATATATTATTTTTGCCAAAATGAAACTGAATTTTGATTATAAT
TATCATAAATAAATGATTCATTTTGCAGTGAAGGATGCAATAATTATTCT
AGGAGGTCCCTACCCCATGTTATTCATTCACCAAAACACCATGACGTATA
TCATACTTATATATAAATGTTACATTTATAAATAAAATTACAGTAAAAGT
ATATCTTCATATAGTTGGTGTGAAGACCTCATATACTTATGAGAAAATTC
TATATTGAGACTGAATACATGGNCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_c20.g1 MSMg01no183_c20.g1 CHROMAT_FILE:
MSMg01no183_c20.g1 PHD_FILE: MSMg01no183_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:07 2005
         (279 letters)



>mm_chr8_103283080_103283758
          Length = 679

 Score =  516 bits (267), Expect = e-151
 Identities = 273/275 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   tgaatatagttaatgatatattatttttgccaaaatgaaactgaattttgattataatta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tgaatatagttaatgatatattatttttgccaaaatgaaactgaattttgattataatta 264

                                                                       
Query: 65  tcataaataaatgattcattttgcagtgaaggatgcaataattattctaggaggtcccta 124
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 tcataaataaatgattcattttgcagtgaaggatacaataattattctaggaggtcccta 324

                                                                       
Query: 125 ccccatgttattcattcaccaaaacaccatgacgtatatcatacttatatataaatgtta 184
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 325 ccccatgttattcattcaccaaaacaccatgacgtatatcgtacttatatataaatgtta 384

                                                                       
Query: 185 catttataaataaaattacagtaaaagtatatcttcatatagttggtgtgaagacctcat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catttataaataaaattacagtaaaagtatatcttcatatagttggtgtgaagacctcat 444

                                              
Query: 245 atacttatgagaaaattctatattgagactgaata 279
           |||||||||||||||||||||||||||||||||||
Sbjct: 445 atacttatgagaaaattctatattgagactgaata 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)