Query= MSMg01no183_j12.b1 MSMg01no183_j12.b1 CHROMAT_FILE:
MSMg01no183_j12.b1 PHD_FILE: MSMg01no183_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:39 2005
(570 letters)
>mm_chr8_28148361_28149329
Length = 969
Score = 1040 bits (538), Expect = 0.0
Identities = 559/566 (98%), Gaps = 1/566 (0%)
Strand = Plus / Minus
Query: 5 gaattcactgcctcacaaaactgcaggcttatcacattttacatgtttagaattcaaatg 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 gaattcactgcct-acaaaactgcaggcttatcacattttacatgtttagaattcaaatg 711
Query: 65 cctaagtcagattttatagtattacaaaaaacaaggtcataaagacagatgggctaggca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 cctaagtcagattttatagtattacaaaaaacaaggtcataaagacagatgggctaggca 651
Query: 125 tcccatgctaaaaagacatctgagttccatgattttactgctgggacagataccaatagc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tcccatgctaaaaagacatctgagttccatgattttactgctgggacagataccaatagc 591
Query: 185 tactgaatttatgctatgacatgaggacatttctgttctgttaaagaagtgacattaaag 244
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 590 tactgaatttatgctatgacatggggacatttctgttctgttaaagaagtgacattaaag 531
Query: 245 gggcagggaaggagcagctgcagcaggactttactgtggctctttgtgatggagggatga 304
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 530 gggcagggaaggagcagctgcagcaggactttactgtggctctttgtaatggagggatga 471
Query: 305 gctctcagaatgctagttacagagcctctcgggctaggagggcgctggatggcgggatac 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 470 gctctcagaatgctagttacagagcctctcgggctaggagggcgctggatggcggggtac 411
Query: 365 cctccctcctgcaccgactccactgaagtagtgttttctcaggtgcatgtacaagagagg 424
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 410 cctccctcctgcaccgactccactgaagtagtgttttctcaggtgcacgtacaagagagg 351
Query: 425 atgctgggtatagcatgttgctctcaacaagtgattagcagcaacaaatgagaagaagat 484
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 350 atgctgggtatagcacgttgctctcaacaagtggttagcagcaacaaatgagaagaagat 291
Query: 485 gagttggtcttggggaaaaaaacccacttttgcaagagcttttgagcacattaaaatgtc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gagttggtcttggggaaaaaaacccacttttgcaagagcttttgagcacattaaaatgtc 231
Query: 545 cttttcaggaacattttgtagtttgt 570
||||||||||||||||||||||||||
Sbjct: 230 cttttcaggaacattttgtagtttgt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 969
Length adjustment: 10
Effective length of query: 560
Effective length of database: 959
Effective search space: 537040
Effective search space used: 537040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no183_j12.g1 MSMg01no183_j12.g1 CHROMAT_FILE:
MSMg01no183_j12.g1 PHD_FILE: MSMg01no183_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:39 2005
(282 letters)
>mm_chr8_28008213_28008894
Length = 682
Score = 528 bits (273), Expect = e-154
Identities = 279/281 (99%)
Strand = Plus / Plus
Query: 1 tcagctgtgttctcctgacccaaagaagtttagtgagggacagttagcaatgaccattgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagctgtgttctcctgacccaaagaagtttagtgagggacagttagcaatgaccattgc 260
Query: 61 ataacctcccactcctagaaacaagtctcccacgcatgcgtctgaaacaaagattttcaa 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 ataacctcccactcctagaaacaagtcccccacgcatgcgtctgaaacaaagattttcaa 320
Query: 121 attttagtagtaaggtatgtaaaaagttaaaggtccaagggaggggtcactttcccagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attttagtagtaaggtatgtaaaaagttaaaggtccaagggaggggtcactttcccagtc 380
Query: 181 ccccggggaattagctgtgcacccatgaagtcaggcacaacttttgtaagaaggcagtct 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 ccccggggaattagctgtgcacccgtgaagtcaggcacaacttttgtaagaaggcagtct 440
Query: 241 ctcctgctgtttctctggtgctctgtagtccaggctagctg 281
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcctgctgtttctctggtgctctgtagtccaggctagctg 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
