BAC Information

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BAC

Clone NameMSMg01-184A07
Chromosome8 (Build37)
Map Location 37,155,294 - 37,155,647
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666797, LOC666804, Ppp1r3b, Thex1, Mfhas1, LOC100041572, Gm501, Cldn23, LOC671641
Downstream geneD8Ertd82e, Lonrf1, EG544878, 6430573F11Rik, Dlc1, LOC100042892, A730069N07Rik, AI429214
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184A07.T7 (MSMg01no184_a07.b1)MSMg01-184A07.TJ (MSMg01no184_a07.g1)
ACCAG376432AG376433
length1,236698
length of high quality
(start - end)
369 (28 - 396)288 (76 - 363)
definitionCHROMAT_FILE: MSMg01no184_a07.b1 PHD_FILE: MSMg01no184_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:12 2005CHROMAT_FILE: MSMg01no184_a07.g1 PHD_FILE: MSMg01no184_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGACTATGCGCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCTT
TAGCCCAGTCTACATGCTCTCTGAGCCCTCTCAAATATCCCGGCTCCGGT
TTTCTTAGGATAATTTAATGGCACACACTTCTTGCTTCTGCCTCTTTGGT
TCTTCAGTTATAAACTACATTACCTTACCCCCAAGCACCCCTGTCTCAAT
CTTGTCTCTCAATCTCCTAAAATTTAACAGCTCTCTTGTACAGAATGGCG
CCCAAGCACTAAAACACCCAAGAGAATTGCTCTTACAAAAGGTCTGATCT
GTATCAAAGAGCTCCATCCCTGAGTAGAAAACACCATGAAAAGCAAGTCG
CCAGATGCAAAGTGCTGAGCACACACAAATTGCACTGCATTGCAGGGTGC
GTGGTGCGGGGTGCGAGTCTAAGCCAAACGTCCACCACATGCACGAGCTT
ATTTGTTCCCCCCCCCATTATAACACACCGAACAGCTGAAAAACAGGCAC
TGTGCAAGTGGGTGGTATTTTGTATACATCTTTGCCACTTTTGAAGATTT
GTTTTTCATTAGGCAGGCTGAAGTCTTTTTTGCTGCCACATAGCTGTCAT
AAAAGGTTAATGATAAATCCTTGTTATGTATTATCATTGCTAGTATTGTA
TTTTTTCTCCTGTATCTCCTTCTAAACATTTGCTAATCATTTTTTGATCT
TAAATTCCACATTTACCTTTCATTAGCTTTTTCTTTCTTTTATTTATAAT
CTCCTTTTTGTCTTATTTATTTTTCTCTCTTTTTCCTGTTATAGCCATTT
ATCTATCATTTATTTTTTTCTTTCTTCATCCTTTCTTTTTTTCTTCTATA
TTCATTCTTTCTTTTTTTTATTACTATATACATTTTTATATTTTTCTTTA
TTTTCTTATCTTTTATTTATTACTATTTTATTATATCTCTCTAATTTTTT
TATTTCATACATTCTTTATTTTTTTATTTATTATTTATTCTTTATATTTT
TTATATTTCATTTAATATTTCCTTACTCTTTTATTTCTCTTTTTTTTATT
TTCTTATCTCTTCTTTCATCTTTTTATTTTATTCTTTTTCTTTCTATTAT
TTTTATTTCTATTCTTATTCTTCATTTTTTTTTTTCTCCTTTCCTTCTTA
TTTTTCTTGTATTTTCTCTGTTCCTTTATTCTTTCACATTTCTTTTATTA
TCTTAACTATTTTTATGTCCATTATCTTTCTCTTAT
CCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACAGGGGAGGGTGGTTAAAAAGCTA
TCCCTTAGGTGAGTGGTTGGTGCACGCCTTTAATCCCAGCACTCAAGAAG
CAGAGTCAGGCAGATCTTTGAGTTCAAGGCCAGCCTGGTCTATGGAGTGA
GTTCCAGGACAGCCAGGGCTACAAAGAGAAACCCTGTCCCAGAAATAAAA
AAAAAAAAAAAAAAAAAAAAATTAACCAAAAGTCTGCGTGGCCTCCACAA
ACATGCCATGACACATGCACACATGCATCCCCTCCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCCCCCCCCCCCCCTCTCTCTCTCTCTCTCTCC
CTCTCCCTCTCTTTCCCCCCCCCCACGACTCCCTTTCTCTCCCTCACACA
CATAAGCAACAGCAACAACAACAACAATGATATAATAAACGCATATTTAA
CCTTGTAAAAACCTGTCAAATAGTTGTCTAGAGTGGCAATACTATTTACA
CGCTGTCTTAATTAGGATTTGTAAAGCTTCCGTGGAACACCATGACCAAA
AATCTAGTTGGGGAGGAAAGGGTTTATTTTGCTTATACTCCCATATCACT
GTTATTATTAAAAGAAGTACGGACGGGAGTTCATACAGAAAACTGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_a07.b1 MSMg01no184_a07.b1 CHROMAT_FILE:
MSMg01no184_a07.b1 PHD_FILE: MSMg01no184_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:12 2005
         (369 letters)



>mm_chr8_37155079_37155847
          Length = 769

 Score =  685 bits (354), Expect = 0.0
 Identities = 354/354 (100%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaattctttagcccagtctacatgctctctgagccctctcaaatatcccggctccggttt 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattctttagcccagtctacatgctctctgagccctctcaaatatcccggctccggttt 275

                                                                       
Query: 76  tcttaggataatttaatggcacacacttcttgcttctgcctctttggttcttcagttata 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tcttaggataatttaatggcacacacttcttgcttctgcctctttggttcttcagttata 335

                                                                       
Query: 136 aactacattaccttacccccaagcacccctgtctcaatcttgtctctcaatctcctaaaa 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aactacattaccttacccccaagcacccctgtctcaatcttgtctctcaatctcctaaaa 395

                                                                       
Query: 196 tttaacagctctcttgtacagaatggcgcccaagcactaaaacacccaagagaattgctc 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttaacagctctcttgtacagaatggcgcccaagcactaaaacacccaagagaattgctc 455

                                                                       
Query: 256 ttacaaaaggtctgatctgtatcaaagagctccatccctgagtagaaaacaccatgaaaa 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ttacaaaaggtctgatctgtatcaaagagctccatccctgagtagaaaacaccatgaaaa 515

                                                                 
Query: 316 gcaagtcgccagatgcaaagtgctgagcacacacaaattgcactgcattgcagg 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gcaagtcgccagatgcaaagtgctgagcacacacaaattgcactgcattgcagg 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)