BAC Information

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BAC

Clone NameMSMg01-184J02
Chromosome8 (Build37)
Map Location 76,913,891 - 76,914,204
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666134, Crry-ps, LOC666146
Downstream geneIsx, Hmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5, Rasd2, LOC675507, LOC384845
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184J02.T7 (MSMg01no184_j02.b1)MSMg01-184J02.TJ (MSMg01no184_j02.g1)
ACCAG376813AG376814
length755745
length of high quality
(start - end)
316 (55 - 370)293 (75 - 367)
definitionCHROMAT_FILE: MSMg01no184_j02.b1 PHD_FILE: MSMg01no184_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:59 2005CHROMAT_FILE: MSMg01no184_j02.g1 PHD_FILE: MSMg01no184_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCAGATTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTTTGGTCTTTGTATTCCATACTTCCTGAATAACAAT
CCAAGTATGGATTTGCCTTCCCTGCTCAAACTTCTGTGTTAGTAGCAACA
TTCATGCTATAAAAATCAAGAAATGTTTAAAGTATTAATTATTTTTTTAC
CATAACATCTATCACCAGTTTATATTTGACTTTGGAACTAATCATATAGC
AAAGAAAGTGAAGTCTTAGTGCTCATTTTACATTTCACTTATTCATTCAT
TTAGGTAGTGTGTAAATCTGTATGTGTGCCACATCTCTCATTCTACCATA
GGAACCTGGGGATTGAACTCATTTCTTAACACTTGCCAGCAAGCACCAGC
TCTATCTTTGCTTATTTTGTTGGTTTTGACACGAATTCCCTTGCATCCCA
TGCTGTCCCTAAATTCCATGTAAGTACAACAAAATAACTGAGAGAAACAA
CCAAGAGACAGAAGGACTTATTTTGGCTCACAGGTTCAGAGATCACTGTA
GAGAGACTCTCTTGTGTACTGTACACATCACATGTCAACAAAAAGCTGAT
GGTATATTAGCTGAGGCAGGAAAAAGGAAGTGGGAGTTCCAGTAGAAACT
CTCAGAGTCAGGCATGGAAATAGATTTGCCCCAAACTCTGAGGAGACATA
TAAATGAAAATGAGAAGAGGTAACCAGCCATGTGACACTCATAGAATAGA
ATAAA
AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGGATCATAACTAAACATAATAAAA
GCGATATACAGCAAACCAGTAGCCAACAGCAAACTAAATGGAGAGGAACA
TGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTC
CCTACCTATTCAATATAGTGCTTGAAATCCTAACAACAAAACATCAAGGG
GATACAAATTGGAAAGGAAGAAGTCAAAATATCACTATTTACAGATGATA
TGATAGTATATATAAGTTACCCTAAAATTTCCACCAGGGAACTCCTAAAG
CTGATAAGCAGGTCCAGTGCATTAGCTGGATATAAAATTAACTCAAACAA
ATCATTGGCCTTTCTTTACACAAAGGATAAACAGGCTGACAACAAAATTA
GGGAAACAAATAGTCACAAACAATATAAAATACCTTGATGGGACTCTAAC
TAAAGAAGTGAAAGATATGTATGATAAGAACTTCAAGTCTCTGAAGAAAG
AAATTGAAGTAGATCTCAGAAGATGGGAAGATCTCTTTGCTCATGGACTG
GCAGGATTAGTGTAGTAAAAATGGCTATCTTGACGAAAGCAATCTACAGA
TTAATTGCAGTCCCCATCAAAATTCCAAATCAATTCTTCAATGAATTAAA
AAGGGCAATTTGCAAATTCATGTGGAACAACAAAAAAACTAGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_j02.b1 MSMg01no184_j02.b1 CHROMAT_FILE:
MSMg01no184_j02.b1 PHD_FILE: MSMg01no184_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:59 2005
         (316 letters)



>mm_chr8_76913687_76914404
          Length = 718

 Score =  542 bits (280), Expect = e-158
 Identities = 305/314 (97%), Gaps = 2/314 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttggtctttgtattccatacttcctgaataacaatccaagtatggatttgcct 64
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gaattccttggtctttgtattccatacttcctgaataacaatccaagtatggatttgcct 459

                                                                       
Query: 65  tccctgctcaaacttctgtgttagtagcaacattcatgctataaaaatcaagaaatgttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tccctgctcaaacttctgtgttagtagcaacattcatgctataaaaatcaagaaatgttt 399

                                                                       
Query: 125 aaagtatta--attatttttttaccataacatctatcaccagtttatatttgactttgga 182
           |||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 398 aaagtattattattatttttttaccataacatctatcaccagtttatatctgactttgga 339

                                                                       
Query: 183 actaatcatatagcaaagaaagtgaagtcttagtgctcattttacatttcacttattcat 242
           ||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 338 actaatcgtatagcaaagaaaatgaagtcttagtgttcattttacatttcacttattcat 279

                                                                       
Query: 243 tcatttaggtagtgtgtaaatctgtatgtgtgccacatctctcattctaccataggaacc 302
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tcatttaggtagtatgtgaatctgtatgtgtgccacatctctcattctaccataggaacc 219

                         
Query: 303 tggggattgaactc 316
           ||||||||||||||
Sbjct: 218 tggggattgaactc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 718
Length adjustment: 9
Effective length of query: 307
Effective length of database: 709
Effective search space:   217663
Effective search space used:   217663
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)