BAC Information

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BAC

Clone NameMSMg01-185G03
Chromosome8 (Build37)
Map Location 34,358,574 - 34,428,499
singlet/doubletdoublet
Overlap geneWrn
Upstream geneEG546052, LOC100042715, LOC628408, EG628412
Downstream genePurg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms, LOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185G03.T7 (MSMg01no185_g03.b1)MSMg01-185G03.TJ (MSMg01no185_g03.g1)
ACCAG377391AG377392
length714721
length of high quality
(start - end)
661 (36 - 696)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no185_g03.b1 PHD_FILE: MSMg01no185_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:04 2005CHROMAT_FILE: MSMg01no185_g03.g1 PHD_FILE: MSMg01no185_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,427,843 - 34,428,499)(34,358,574 - 34,358,858)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTGA
AGCACTTTTCCTTCTTTTAATAAACTATCACCTCCAGTTGATTTCACCTT
AGTCCATCACTTTACACAGGTCTCATTTCAAACCTATAGCAGTCCTCTTA
TTTATTCTAAAATACTAACTTTTCGGTCTATAGTACAAAGCTGGGTATTT
GTTTTATACTTTAGATATATGTAATAAAATTACATATACATACTATATGG
CAACTCATGGTTATTCAGTCAGTCTGAATGAAAAGTTAATCAAATGATCA
AGTTTTTTTCTCTCAAATTTCAAGGATTTGAATATAGTTTTATAGGTAGC
TCCAAAAAAAAAAATCTGAAAGAGTTTATTGGAGAGAAGTTAAATAGATT
TGAACTTGTGCTTTGGATGGTATTGATAAAACATTTTACTTTGTACCTTC
AAGGGTTCAGTGGAAAGTCATCCATTCTGTATTAGAAGAGAGAAGAGATA
ATGTTGTTGTCATGGCAACTGGTAAGCTATACTTAAAGTAAATAATTGAA
TCATCTAAAAGTCATAAAGGGTTTAAAGTGCTTAATCTTTCAGAAACTTA
TAAAATATAGGAAGGAATGATTGGGGGAAAAGCCTTCAAACTTATGCATG
AATTACCATGTCAGTCCACTTATTCTGCTATATAGGCACACTGTAAGAAG
AAAGTAAAGCATCA
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCAGCTTTGCAGAAAATGTTTG
TTTTTAAGGTGACCGTTGCTTTACTCCAACAGAATTTTTTAAAAATCAGA
TTTATTGTTATAACATGCTGACCTTATATTTGTGGATTTAAGAGGGAAAT
TCTCTAATGTGCCTTAACTTGAATTCTGGGGTTGGGGATTGGGGAACATC
ATTTCTTAAATATTTCTGTAAGGCAAGCAGGGGACAGAGCTTCATGGCAG
AGCTGAGGTTCCTCAGTGGGACAAGAACAAAGAACAAAGGCCCTTTTTAA
TGGGAGCTTTGTCTGCATGCGTGCCTATGCATCATGTGTTTGCATGGTCC
CAACAGAGGTCAGAACGGGCTGTCAAGAGTCCCTGGAACTGGAGTTACAG
TAAGTTGTGGGTGGCAGAAACGCCAGTCTTCTGGAAGAACAGCCTGGAGT
CCTAACTGCTGAGCCATCTGTCAAGCACGGAGAAGAAACCCCTCCGCTGG
GGGCTACAGAGCTTGGCATGTCTGGTAGGGACTCAGAGGCCGTCAGGGGA
AATGGAGGAGTCAGTCCTTCAGCGGCTGGGAGTAACCATGAAGGACCCGG
TGCCTTTAGACCTGCACGCTCGATTTGAGGATGGGTGAGAAAATATCATC
TGAAAAGAAAGACTTTCAGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_g03.b1 MSMg01no185_g03.b1 CHROMAT_FILE:
MSMg01no185_g03.b1 PHD_FILE: MSMg01no185_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:04 2005
         (661 letters)



>mm_chr8_34427639_34428699
          Length = 1061

 Score = 1239 bits (641), Expect = 0.0
 Identities = 653/657 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattgaagcacttttccttcttttaataaactatcacctccagttgatttcacct 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gaattcattgaagcatttttccttcttttaataaactatcacctccagttgatttcacct 802

                                                                       
Query: 65  tagtccatcactttacacaggtctcatttcaaacctatagcagtcctcttatttattcta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tagtccatcactttacacaggtctcatttcaaacctatagcagtcctcttatttattcta 742

                                                                       
Query: 125 aaatactaacttttcggtctatagtacaaagctgggtatttgttttatactttagatata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaatactaacttttcggtctatagtacaaagctgggtatttgttttatactttagatata 682

                                                                       
Query: 185 tgtaataaaattacatatacatactatatggcaactcatggttattcagtcagtctgaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtaataaaattacatatacatactatatggcaactcatggttattcagtcagtctgaat 622

                                                                       
Query: 245 gaaaagttaatcaaatgatcaagtttttttctctcaaatttcaaggatttgaatatagtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaaagttaatcaaatgatcaagtttttttctctcaaatttcaaggatttgaatatagtt 562

                                                                       
Query: 305 ttataggtagctccaaaaaaaaaaatctgaaagagtttattggagagaagttaaatagat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttataggtagctccaaaaaaaaaaatctgaaagagtttattggagagaagttaaatagat 502

                                                                       
Query: 365 ttgaacttgtgctttggatggtattgataaaacattttactttgtaccttcaagggttca 424
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgaacttgtgctttggatgctattgataaaacattttactttgtaccttcaagggttca 442

                                                                       
Query: 425 gtggaaagtcatccattctgtattagaagagagaagagataatgttgttgtcatggcaac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtggaaagtcatccattctgtattagaagagagaagagataatgttgttgtcatggcaac 382

                                                                       
Query: 485 tggtaagctatacttaaagtaaataattgaatcatctaaaagtcataaagggtttaaagt 544
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 tggtaagctatacttaaagtaaataatttaatcatctaaaagtcataaagggtttaaagt 322

                                                                       
Query: 545 gcttaatctttcagaaacttataaaatataggaaggaatgattgggggaaaagccttcaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttaatctttcagaaacttataaaatataggaaggaatgattgggggaaaagccttcaa 262

                                                                    
Query: 605 acttatgcatgaattaccatgtcagtccacttattctgctatataggcacactgtaa 661
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 acttatgcatgaattaccatgtcagtccacttattctgctatataagcacactgtaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no185_g03.g1 MSMg01no185_g03.g1 CHROMAT_FILE:
MSMg01no185_g03.g1 PHD_FILE: MSMg01no185_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:04 2005
         (289 letters)



>mm_chr8_34358374_34359062
          Length = 689

 Score =  543 bits (281), Expect = e-159
 Identities = 284/285 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcagctttgcagaaaatgtttgtttttaaggtgaccgttgctttactccaacagaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 actcagctttgcagaaaatgtttgtttttaaggtgaccgttgctttagtccaacagaatt 260

                                                                       
Query: 61  ttttaaaaatcagatttattgttataacatgctgaccttatatttgtggatttaagaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttaaaaatcagatttattgttataacatgctgaccttatatttgtggatttaagaggg 320

                                                                       
Query: 121 aaattctctaatgtgccttaacttgaattctggggttggggattggggaacatcatttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaattctctaatgtgccttaacttgaattctggggttggggattggggaacatcatttct 380

                                                                       
Query: 181 taaatatttctgtaaggcaagcaggggacagagcttcatggcagagctgaggttcctcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaatatttctgtaaggcaagcaggggacagagcttcatggcagagctgaggttcctcag 440

                                                        
Query: 241 tgggacaagaacaaagaacaaaggccctttttaatgggagctttg 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggacaagaacaaagaacaaaggccctttttaatgggagctttg 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)