Query= MSMg01no186_i21.b1 MSMg01no186_i21.b1 CHROMAT_FILE:
MSMg01no186_i21.b1 PHD_FILE: MSMg01no186_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:34 2005
(581 letters)
>mm_chr8_5827468_5828448
Length = 981
Score = 1087 bits (562), Expect = 0.0
Identities = 574/578 (99%), Gaps = 2/578 (0%)
Strand = Plus / Minus
Query: 5 gaattctagagtacataattttatttttatatttttgtatagtagtaaattttttcaata 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 gaattctagagtacataattttatttttatatttttgtatagtagtaaattttttcaata 758
Query: 65 aacttattcatcaacaatgacccaaaaccaaaggaaatagcatagttttgtataaatatg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 aacttattcatcaacaatgacccaaaaccaaaggaaatagcatagttttgtataaatatg 698
Query: 125 tggctttcagtagtattacttaaaacaagtgatgaaaatttcttttcattaaattgttct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 tggctttcagtagtattacttaaaacaagtgatgaaaatttcttttcattaaattgttct 638
Query: 185 catttcccagaccaatgaggatccttaaccatagtaaaaatgccctcatgccaaaagaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 catttcccagaccaatgaggatccttaaccatagtaaaaatgccctcatgccaaaagaaa 578
Query: 245 aaaatcaatatgcagatagttagaattggtatcaaaagcacatgtctggaagaatcaggc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 aaaatcaatatgcagatagttagaattggtatcaaaagcacatgtctggaagaatcaggc 518
Query: 305 ctgcatagaactatatggtatactaaaagacacaggtttacctgtgactgtaagaataat 364
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 517 ctgcatagaactatatggtatactaaaagacacaggttcacctgtgactgtaagaataat 458
Query: 365 tgatgactaagataaaactccagttgtgctaatttaatttttgttcactttcaatctcag 424
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 457 tgatgactaagataaaactccagttgtgctaatttaa-ttttgttcactttcaatctcag 399
Query: 425 attatatacgttttctgagagtgccaagcaaaatacttcatactggatggtaaacgcaag 484
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 398 attatatacgttttctgagagtgccaagcaaaatacttcatactggatggaaaacgcaag 339
Query: 485 tggg-ggggtggcatttcacgctacaacaaatatctcttattcctacatatgaaacattt 543
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tgggaggggtggcatttcacgctacaacaaatatctcttattcctacatatgaaacattt 279
Query: 544 tgtacttaaaagtcagaaaaattgtcaatactttgcaa 581
||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tgtacttaaaagtcagaaaaattgtcaatactttgcaa 241
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no186_i21.g1 MSMg01no186_i21.g1 CHROMAT_FILE:
MSMg01no186_i21.g1 PHD_FILE: MSMg01no186_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:34 2005
(288 letters)
>mm_chr8_5752777_5753464
Length = 688
Score = 468 bits (242), Expect = e-136
Identities = 285/316 (90%), Gaps = 28/316 (8%)
Strand = Plus / Plus
Query: 1 acccctgcactctgttctctaccacttctagcttacataacttgctatgtgtttttacat 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 acccctgcactctgttctctaccacttctagcttacataactttctatgtgtttttacat 260
Query: 61 gtgtacagcatttaacactttccattccaatagttacttatctttccttatctttcttgc 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtacagcatttaacattttccattccaatagttacttatctttccttatctttcttgc 320
Query: 121 ctggcatgtaaatatagatcactttataatgttttattacatttttggttt--ct----- 173
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 ctgacatgtaaatatagatcactttataatgttttattacatttttggtttttctttctt 380
Query: 174 ---------ctttctttctttctttctttctttctttctttctttcttcctt-------- 216
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctttctttctttctttctttctttctttctttctttctttctttcttccttccttcctt 440
Query: 217 ----tctttttttctttcttttttttttcaagacaggatttttctgtatagccctggctg 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctttctttttttctttcttttttttttcaagacaggatttttctgtatagccctggctg 500
Query: 273 tcctggaactcacttt 288
||||||||||||||||
Sbjct: 501 tcctggaactcacttt 516
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
