CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTTAGATTGGGCTGTTATCAAATGAATTATAGGCCAGCCTAGAC
TGCTGAGACCTTGTCTCAACTACAGAACGATAAAACCAAAGTTTCTGAGT
TGTATAGAAGGTATGGCTCCATTTGTCTGAAATAATTATGTTTGTGTGCA
CGTCAACAAGTTTAGAGAAAAGATCTGAAAGCATGTAAAACCCAATGCTA
ACCATGACGAGTCTGTAACTGGGATTAGATATTCAGACAAGGTATACAGG
CCTTTCATTTTTTTCTCCCATAGATCTTCCATTTATTGCCTTTATAATGG
AAAATGTTATATATTTTGAGTTTATGTCCAAAAAGGCTTTGAAGAAGAAA
ATACATTTTTAAAAAAATATCTAGGCATGGTGTACATAAAGTGAGAACTT
TGTGCTGCCTCCGCCTGGAAATGCCATTTTGTTCCTCTGCAATTAGTGAA
TGAATTTAATGTTTCTCTCAGATATAGAATTCCAGGATACATCTGGATGC
AGCGTAGTCAGGAAATGGCTTAGACAGAGACTTGGTTTTGAAGACTGGAT
ACAGGTGTTAAAAACAAACAAGCCAGCAAAGCTGGGGACCCTTAAAATAA
AAAAGGCCATCGCTCCCCTCCCCCATTCAAATCCCATAATGGTCTCATTG
TCTTCTAAGGTTATTGTCTTTTAAGCGCTTAATCTCCCATGTTN

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTTGCTTTGTTAGTGTTGTGCTTG
GCTAGAATGCAAGAAGCCCTGGATTCTATCCCAGCAAGGCATGAACTGGG
TGTGGCGGTACACACCTATAATTCCAGCACATGGGGTGGATGCAGGTGAC
TCAGGAATTCAGAGTCATCCTTGGCTATAATCATAGTATGTATGCTGGCC
TTGTTCATAGAGCCCTAGGTTCAATCCCCAGCATCAAAACCCAGCTGTGA
TGGCACACACCTGTAATCCCAGAGCTCAAGAGAGGGAGGCAGGAGGACTA
AGAGTACACAGGGTCATCTTGGACTACACACCACCTATAACAGGGTCATC
TTGGACTACACACCACCTATAACAGGGTCATCTTGGACTACACACCACCT
ATAAGGCCAGCCTGAGCTACATGAGATCCTGTAAAAGGAAGAAGACGGAA
GGAAAAGAGCAATGGTGGAGAGGCACGTATCGCCCTCATATCCCTAATCT
GCCATACCAAAACCCCACTTTCCCTAACATTTTTTTATTTCCCTTTGACG
TGTGGTTCCCTCACTCTGGTCCCCCCTCTTCCCCCTTATCACCGGCATGT
GCTGCCTCTTTTTTTATATACTCCCCCCTTTCGTTTCCCCCGTTTAAACG
ACATCCCCTTACCTCTGATACCGCATTAGTTGTTCTCGCCCG

Query= MSMg01no186_p04.b1 MSMg01no186_p04.b1 CHROMAT_FILE:
MSMg01no186_p04.b1 PHD_FILE: MSMg01no186_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:06 2005
         (562 letters)



>mm_chr8_83331087_83332047
          Length = 961

 Score = 1031 bits (533), Expect = 0.0
 Identities = 551/557 (98%), Gaps = 1/557 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagttagattgggctgttatcaaatgaattataggccagcctagactgctgaga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagttagattgggctgttatcaaatgaattataggccagcctagactgctgaga 263

                                                                       
Query: 64  ccttgtctcaactacagaacgataaaaccaaagtttctgagttgtatagaaggtatggct 123
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 264 ccttgtctcaactacagaacgataaaaccaaagtttcagagttgtatagaaggtatggct 323

                                                                       
Query: 124 ccatttgtctgaaataattatgtttgtgtgcacgtcaacaagtttagagaaaagatctga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccatttgtctgaaataattatgtttgtgtgcacgtcaacaagtttagagaaaagatctga 383

                                                                       
Query: 184 aagcatgtaaaacccaatgctaaccatgacgagtctgtaactgggattagatattcagac 243
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 384 aagcatgtaaaacccaatgctaaccatgacgagtctgtaactgggatgagatattcagac 443

                                                                       
Query: 244 aaggtatacaggcctttcatttttttctcccatagatcttccatttattgcctttataat 303
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 444 aaggtatacaggcctttcatttttt-ctcccatagatcttccatttattgcctttataat 502

                                                                       
Query: 304 ggaaaatgttatatattttgagtttatgtccaaaaaggctttgaagaagaaaatacattt 363
           |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 503 ggaaaatgttatatattttgagtttatgtctaaaaaggctttgaaaaagaaaatacattt 562

                                                                       
Query: 364 ttaaaaaaatatctaggcatggtgtacataaagtgagaactttgtgctgcctccgcctgg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttaaaaaaatatctaggcatggtgtacataaagtgagaactttgtgctgcctccgcctgg 622

                                                                       
Query: 424 aaatgccattttgttcctctgcaattagtgaatgaatttaatgtttctctcagatataga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aaatgccattttgttcctctgcaattagtgaatgaatttaatgtttctctcagatataga 682

                                                                       
Query: 484 attccaggatacatctggatgcagcgtagtcaggaaatggcttagacagagacttggttt 543
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 683 attccaggatacatctggatgcagcatagtcaggaaatggcttagacagagacttggttt 742

                            
Query: 544 tgaagactggatacagg 560
           |||||||||||||||||
Sbjct: 743 tgaagactggatacagg 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 961
Length adjustment: 10
Effective length of query: 552
Effective length of database: 951
Effective search space:   524952
Effective search space used:   524952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)