BAC Information

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BAC

Clone NameMSMg01-187G15
Chromosome8 (Build37)
Map Location 31,669,390 - 31,803,910
singlet/doubletdoublet
Overlap genenone
Upstream geneEG628189
Downstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568, 7420700N18Rik, LOC100041329
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187G15.T7 (MSMg01no187_g15.b1)MSMg01-187G15.TJ (MSMg01no187_g15.g1)
ACCAG378771AG378772
length740743
length of high quality
(start - end)		313 (45 - 357)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no187_g15.b1 PHD_FILE: MSMg01no187_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:43 2005CHROMAT_FILE: MSMg01no187_g15.g1 PHD_FILE: MSMg01no187_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,803,602 - 31,803,910)(31,669,390 - 31,669,671)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACTTTCTTGCCTTCCTTGCTGTAATGGTCAGAATCCTCTAAAACT
ACATGTGGTTGTGTTCTGGCAGGTATTTTGCTACAGTAATGAGAAAATAT
GACTAATAGGGACTGTCGTGGAGCTTTGTGCAAAGGAGTTGCCAGTAAAT
TAATTACCCCAGAAAAATAATATCCATAAGAATGGAAAAAAAGAAGACCC
ACGTGAGCAGTGTGTCATGAAAACTTGGTTTACACAGCCCTTAGTGTCTC
TGCGGAGGGATGTTGAATGTCTCAAGTGACAGCTGCAGCAAGGAAATCAG
TAAGAACTTACCTGTACACGATCACTTTTTAAGACAGAATCTTACAATAT
AGCCCCAACTGGCCTCATTTTTATGATCCATCTACCTCAGTCCTCAGAAT
ACTGGGAACTCAGGTATGTGCCACCCCACTCATCTTAGGTGACACTTTTT
CTTTTCTTTTTTTTTAAAGGAAGGACACTGGAAACCTGGGATGGAGCACA
GCCATCTAAATGGAAAAGGCAGAGAACAGGCAAGAAAAGTGTGTAATAGT
GTCACCTGCAGAACACATTTGCCACAGACAGGCTCTCTCGATGGTGGGGA
AATAACAAGATGGGGGGAATGTCATATACGATGTCCCACCCATGAAAGAT
CTCTCCTCATCTGTTTCCCGATGCTGAAAATGGCAACCGT

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTGAGGTTCTAGATTGGAGGGAA
TTTATAAGTGTCCCAAGGCTCAGCCTCTCCAGACTCAGCAGTTGAAGACA
TAAAAGTTCCTCAAGGGCAGATTCTCATCAAGTGCAGTCTCCTGAATCTG
GCATGCTATTTTTATAACAGAAATTCAGGGCTGCCATAGGGATGAAACCT
ATGGAAATATTTCCAGTATGTGAAGTCAAACTAAAGGCCCGTGGGCAAAC
CACATTTGATCCAAAGCATTAACTATTGTCATCTCGAAGGGCTGCCATTT
AGAGAAGGAATTTTATCTAACACCTCCTCTGGCTTGAGCTGGGGGATGTG
GGATAAGAGAACTCAGACCCATCAAAGAGATTTTAAAGGACCCTGAATTT
CTAACGAATGCTGGGCTTATCTAGTTTTTTGCTGCTCTGACAAAACACTC
AAGGAAAATAACTTCAAGTAGAAATCCTTTGTGGGCTTATTGTGTCAGAT
CCTTAAGGAGTTTCATGATTTTGTGGTTGGCTGTTTCCACTGCTGTGTCT
GAGGCAAGGGAAGAGAAGGCTGCTCACTTCACAGTCGCCCGGAAGCAAAG
AGCACATGAGGTTGCAGCAGAGCCTGTGTACACCATTCCTAGACAATCCC
TCCTCCCTCCAACGTCCTCCAATCTAAACTCTTTCAGGGTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_g15.b1 MSMg01no187_g15.b1 CHROMAT_FILE:
MSMg01no187_g15.b1 PHD_FILE: MSMg01no187_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:43 2005
         (313 letters)



>mm_chr8_31803288_31804000
          Length = 713

 Score =  590 bits (305), Expect = e-173
 Identities = 308/309 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccactttcttgccttccttgctgtaatggtcagaatcctctaaaactacatgtgg 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 623 gaattccactttcttgccttccttgctgtaatggtcagaatcctctaaaactgcatgtgg 564

                                                                       
Query: 65  ttgtgttctggcaggtattttgctacagtaatgagaaaatatgactaatagggactgtcg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttgtgttctggcaggtattttgctacagtaatgagaaaatatgactaatagggactgtcg 504

                                                                       
Query: 125 tggagctttgtgcaaaggagttgccagtaaattaattaccccagaaaaataatatccata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tggagctttgtgcaaaggagttgccagtaaattaattaccccagaaaaataatatccata 444

                                                                       
Query: 185 agaatggaaaaaaagaagacccacgtgagcagtgtgtcatgaaaacttggtttacacagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agaatggaaaaaaagaagacccacgtgagcagtgtgtcatgaaaacttggtttacacagc 384

                                                                       
Query: 245 ccttagtgtctctgcggagggatgttgaatgtctcaagtgacagctgcagcaaggaaatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ccttagtgtctctgcggagggatgttgaatgtctcaagtgacagctgcagcaaggaaatc 324

                    
Query: 305 agtaagaac 313
           |||||||||
Sbjct: 323 agtaagaac 315


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no187_g15.g1 MSMg01no187_g15.g1 CHROMAT_FILE:
MSMg01no187_g15.g1 PHD_FILE: MSMg01no187_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:43 2005
         (282 letters)



>mm_chr8_31669190_31669871
          Length = 682

 Score =  545 bits (282), Expect = e-160
 Identities = 282/282 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgaggttctagattggagggaatttataagtgtcccaaggctcagcctctccagactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgaggttctagattggagggaatttataagtgtcccaaggctcagcctctccagactc 260

                                                                       
Query: 61  agcagttgaagacataaaagttcctcaagggcagattctcatcaagtgcagtctcctgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcagttgaagacataaaagttcctcaagggcagattctcatcaagtgcagtctcctgaa 320

                                                                       
Query: 121 tctggcatgctatttttataacagaaattcagggctgccatagggatgaaacctatggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctggcatgctatttttataacagaaattcagggctgccatagggatgaaacctatggaa 380

                                                                       
Query: 181 atatttccagtatgtgaagtcaaactaaaggcccgtgggcaaaccacatttgatccaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatttccagtatgtgaagtcaaactaaaggcccgtgggcaaaccacatttgatccaaag 440

                                                     
Query: 241 cattaactattgtcatctcgaagggctgccatttagagaagg 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattaactattgtcatctcgaagggctgccatttagagaagg 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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