BAC Information

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BAC

Clone NameMSMg01-187O20
Chromosome8 (Build37)
Map Location 29,376,596 - 29,376,906
singlet/doubletsinglet
Overlap genenone
Upstream geneEif4ebp1, LOC732482, Tex24, Chrnb3, Chrna6, 4921537P18Rik, Gm1698, EG666422, LOC666430
Downstream geneEG666446, LOC100042598, Unc5d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187O20.T7 (MSMg01no187_o20.b1)MSMg01-187O20.TJ (MSMg01no187_o20.g1)
ACCAG379111AG379112
length762751
length of high quality
(start - end)
319 (46 - 364)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no187_o20.b1 PHD_FILE: MSMg01no187_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:23 2005CHROMAT_FILE: MSMg01no187_o20.g1 PHD_FILE: MSMg01no187_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAGTTCTTAATGACTATTTGTGCATGAATAGGTATATATTTCAG
CTCTTCTGCACTCTACACAGTCCCTTTAAGTATTCACATTATATCAACAG
TAATGTAATAATTACCTTTGTCCATTAGATTCCTTATGTTTTAGACTGAT
ACAATAATGCTGTGTAGAAATACTGTAAAGATCAAGTATGAAATATAGGA
ATATATGCAGACACTTTCTTAGAATGATATTAGATTAGTCACAAGTTAGT
TTTATATAAAGAAATTTTTTTAGGTAATTGGAGCTTTAATCTTGTAGAAA
CTGACAAAGATCTTTTTTTTCTCCCCACCCCTTCTGTCTTAAATCTCTCT
CTTCCTATATGTATGCACGCAGTACTATATAAATATATGTCTGCAAACAC
ATATAACTATAAATATACGTATACATGCACAGAGTGATATGTGTGAATAT
ACAAATGTCTAAACATTTATCTACAGTAGGATAATCAATTTTACCATCTT
CATTGGATTCTCACATCTGTATGAAAGGTGTTTATGTGACTTAATTAAGT
GTACTCAATTAACACATGGTATACTCTGAGAGAGACATGATGTCTGTCTT
CTCACCCAAGTGAATATACCCAAAAGAGAGAGGCCCTACCTGGGAAAACT
TGAATTGTGTTTCTATGAGAAAAAGGTAGACTTCTCTACATCAGAGAAAT
GTATGGGGCTAC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTCAGATCTATAGCCTATTC
TTACAATTGTTTTTTTTTAATGCTATCCTGTGAGTTCCTTATATATTTTG
GATATTAATCATCGATCAGAGACCATATTATACTGAGTGAGCCAATCCAT
ATTCACAAGTAAAACTGAGTATGCTCACTCTTATTTTTGGCATCTAGCTT
TAAAACTTCAGTCATGAGTGTAATAATAGGAATAACAGCAAATAACCAGG
AAGTAAAAGAGGGACCACAGAGGGGAGGGAAGGACAATTGAAAGGGGAAT
AGGAGGACACAGGTGTTATGACAGAGAACTGAAAACAGTGAGGTAGCCAT
TTTCCTGGGGAGGGAGAGAGGAAGGAAGAGCAACACAGAGGAAGACAAGG
GAGGTATAAGTAACACTAGGGGTTGGAAGAGGTCACAGGAAATTATACTA
TTTAATATCTACTTAAAATATATCACACACTCACATGCACATACACACAC
ATATACACACACATATATATATGTATGTGTATATATATATATATGTATGT
GTATATGTGTATAGATAGACCCGTTTATATATTTTTTTTTACACCTTTAT
TCACTCTTTTGTGTTTCCCGCGCGTTGTTTATTTCAGCGCGTAATTCCCC
GTTTTTCCCCCCTGTCTTTTCATTCTTTTTCATTTCCTTTCCTCCTTTTT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_o20.b1 MSMg01no187_o20.b1 CHROMAT_FILE:
MSMg01no187_o20.b1 PHD_FILE: MSMg01no187_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:23 2005
         (319 letters)



>mm_chr8_29376390_29377108
          Length = 719

 Score =  571 bits (295), Expect = e-167
 Identities = 307/311 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   attccaagttcttaatgactatttgtgcatgaataggtatatatttcagctcttctgcac 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 attccaagttcttaatgactatttgtgcatgaataggtatatatttcagctcttctgcac 266

                                                                       
Query: 67  tctacacagtccctttaagtattcacattatatcaacagtaatgtaataattacctttgt 126
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 267 tctacacagtccctttaagtattcacattatatcaacagtaatgtaacaattacctttgt 326

                                                                       
Query: 127 ccattagattccttatgttttagactgatacaataatgctgtgtagaaatactgtaaaga 186
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 327 ccattagattccttatgttttagactgatacaataatgctgtatagaaatactgtaaaga 386

                                                                       
Query: 187 tcaagtatgaaatataggaatatatgcagacactttcttagaatgatattagattagtca 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tcaagtatgaaatataggaatatatgcagacactttcttagaatgatattagattagtca 446

                                                                       
Query: 247 caagttagttttatataaagaaatttttttaggtaattggagctttaatcttgtagaaac 306
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 447 caagttagttttatataaagaattttttttaggtaattggagctttaatcttgtagaaac 506

                      
Query: 307 tgacaaagatc 317
           ||| |||||||
Sbjct: 507 tgataaagatc 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)