NNNAAAAGTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCTTTGGGTACCATAGTGTTTGTAATGAGAAAATTG
AAAGTCTCTGAAGCCAAAGGGCTTGGCCTCTGGAGCCAGAAAATGCTGTT
TTTTGTCTCAAGGGTGGAGCCCAGATGTCTATCACAGCACTTTTGGTAAC
AGGGTGCTCTCTCTCCTGCCCAAATATGTCATCAGTCCCTTTCTGATGTC
TTGCTGAAATATATATTAGAGAAACTCTGAAGTAGTTATCCATTTCATTA
TGTCTGGAAAACGTCCAGATACAGGTGCATGAATTAAATCAGTTATTCGT
GTATCAATTCAAGCATGAATTTCTTTCTCACTGGACCCCACAAATTATAT
GCTTGAGAAAGCTTCTGCAGTTTCACAAAGATGTGTACTTGACTGCTGGA
AGAAGGAAAAGGACACAAGAGAGCCAAGTTCACTCTTGTCTGCTGGCATC
TTACTGATGGCTCAGATTGCATCCCAAGGATAATTCCGAAGGGCAAGAGA
CAACGCAGGGCAAGTAGTGCCTTCAAAATTTCTCATCCCTAAATGTGTAT
ATGTTGTAGCCTGACTTACTAGCCCTAGAAAAGGTCTGCGACTCTTTTAT
AAATTAGAATGTTGATTTTAAAGGAAAAATGCTTTTTTTTTGCTTGCTTG
TTCTTGCCTCTCGTCCTTTATTTCTCCTCTTCTTCTCTTCTTCTCCCATC
CCCCCC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATTTGACTTGTGATAGTTGTCAG
TAGAATAAAATATAAGAACTTATTTGATTTCTTTTCACTCAGGTTTCAAG
TCCTCTTGTAGTATATATATCAAATTTTCTTCAAAAATTGTCTAGGCCTC
TTCCAGCCTCACCTGAGATACAGAAAACAGTCCTATGAATTGTAAATCAC
TAAAATACAAACATTTCTCCTGGAATGATCCACAAGCAGAAGAAATGTTG
AAGCCAAGTGAATTCTTTGAAGAGGTGTTAAAAGTGACAGTGAGGAGCAG
CCTGTGAACATATGTTCAGAGGAATGAAGCGCAATCAGTTAGCAGCAGAA
AGGCAAACAGCAAATATTCTCAACTACAAGTGGAGAGAGAGAGAGAGAGA
GATAGAGAGAGAGAGAGAGATACCCTTTCTTTCCTCTTCCATTTACTTCA
TCTTTCGTATCTCCCTTCTTCGTTTCCTATCGCTTTCCAACTTTTATTCA
CCCTCTCTATACTTTCCCTTCTTCTTTTCTTTTTACACCCTATTATTCTA
CTTCTCCCTTTCTCCGTTTGCTGTAGGTTTTATTCACTTCCCTCCTCCTT
TATCTTTTTTTCTTTTTTCCCCCACCTTTCCATTCACCTAGATATTACCG
TTCCCCCTACCCTTCCCTCTCTCATACCTACTATTTTTCTTCCTTGCCTC
TCGCCCCCTTTCTACCCATATCTCTTTTTCTCCTTCCCCTCTT

Query= MSMg01no188_e09.b1 MSMg01no188_e09.b1 CHROMAT_FILE:
MSMg01no188_e09.b1 PHD_FILE: MSMg01no188_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:52 2005
         (317 letters)



>mm_chr8_38299089_38299805
          Length = 717

 Score =  601 bits (311), Expect = e-176
 Identities = 311/311 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctttgggtaccatagtgtttgtaatgagaaaattgaaagtctctgaagccaaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctttgggtaccatagtgtttgtaatgagaaaattgaaagtctctgaagccaaa 263

                                                                       
Query: 64  gggcttggcctctggagccagaaaatgctgttttttgtctcaagggtggagcccagatgt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gggcttggcctctggagccagaaaatgctgttttttgtctcaagggtggagcccagatgt 323

                                                                       
Query: 124 ctatcacagcacttttggtaacagggtgctctctctcctgcccaaatatgtcatcagtcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctatcacagcacttttggtaacagggtgctctctctcctgcccaaatatgtcatcagtcc 383

                                                                       
Query: 184 ctttctgatgtcttgctgaaatatatattagagaaactctgaagtagttatccatttcat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctttctgatgtcttgctgaaatatatattagagaaactctgaagtagttatccatttcat 443

                                                                       
Query: 244 tatgtctggaaaacgtccagatacaggtgcatgaattaaatcagttattcgtgtatcaat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tatgtctggaaaacgtccagatacaggtgcatgaattaaatcagttattcgtgtatcaat 503

                      
Query: 304 tcaagcatgaa 314
           |||||||||||
Sbjct: 504 tcaagcatgaa 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no188_e09.g1 MSMg01no188_e09.g1 CHROMAT_FILE:
MSMg01no188_e09.g1 PHD_FILE: MSMg01no188_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:52 2005
         (287 letters)



>mm_chr8_38324364_38325050
          Length = 687

 Score =  555 bits (287), Expect = e-162
 Identities = 287/287 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttgacttgtgatagttgtcagtagaataaaatataagaacttatttgatttcttttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 catttgacttgtgatagttgtcagtagaataaaatataagaacttatttgatttcttttc 428

                                                                       
Query: 61  actcaggtttcaagtcctcttgtagtatatatatcaaattttcttcaaaaattgtctagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 actcaggtttcaagtcctcttgtagtatatatatcaaattttcttcaaaaattgtctagg 368

                                                                       
Query: 121 cctcttccagcctcacctgagatacagaaaacagtcctatgaattgtaaatcactaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cctcttccagcctcacctgagatacagaaaacagtcctatgaattgtaaatcactaaaat 308

                                                                       
Query: 181 acaaacatttctcctggaatgatccacaagcagaagaaatgttgaagccaagtgaattct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 acaaacatttctcctggaatgatccacaagcagaagaaatgttgaagccaagtgaattct 248

                                                          
Query: 241 ttgaagaggtgttaaaagtgacagtgaggagcagcctgtgaacatat 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ttgaagaggtgttaaaagtgacagtgaggagcagcctgtgaacatat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)