BAC Information

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BAC

Clone NameMSMg01-188G17
Chromosome8 (Build37)
Map Location 82,174,849 - 82,175,155
singlet/doubletsinglet
Overlap geneOtud4
Upstream geneSlc10a7, Lsm6, EG666340, EG666346, D630040G17Rik, 1700011L22Rik, Mmaa, A630049P17, Smad1, LOC666378, LOC666388, LOC666392
Downstream geneTpd52-ps, Abce1, Anapc10, LOC100039439, Hhip, LOC546075, Gypa, Frem3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188G17.T7 (MSMg01no188_g17.b1)MSMg01-188G17.TJ (MSMg01no188_g17.g1)
ACCAG379445AG379446
length737777
length of high quality
(start - end)
310 (62 - 371)182 (57 - 238)
definitionCHROMAT_FILE: MSMg01no188_g17.b1 PHD_FILE: MSMg01no188_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:04 2005CHROMAT_FILE: MSMg01no188_g17.g1 PHD_FILE: MSMg01no188_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTGTACCNNNTTAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCGCGGAATTCAAACATTTAAACAGTGCTAGCTAGCCATC
AAATTCCAACTGATGCAATTAAATAAACAGACTAAAAACCTTAGGGAAAG
TCTTTGACAATTAAGATATAAAACACCTTTGAAGTTTTAAAAATTTTTAG
TAGAACGTAATATATTAACTTTCCAGTTATTTTATTTTATTGTTTTACTT
AAGTATTCTACAGTTTACCTGTACATAAGTGAAAGGGCACTTATTTCCAC
TTGTCCTACCCATTCCTGTATTGAGGAAAGAAAAGTTGGCATGTAAGTAT
CTCACTTTTTACAATATACATCTCGTATATTCCCCCCCCCCCGACAGGGT
TTCACTGTATAGCTTTGGCTTTCCTGATACTCACTCATGAAAACCATGCT
GGCCTTGAACTCACAGATCAGTCTGCTTCTACCTTCTGTGTGCTAGAATT
AAAAGCATGCACCACCACTGTCCAGCCATAAACACCCTTTGTATTAGCAT
ACCACTAGTATATTATTATTAACAACAGAGTTAGAGAGATGGCTTAACAG
ATAGGCCATCTTGTTGCTGTTACAAAGGACCTAAGTTTTGGTTCCCAGGA
CAAACAAGGCAGCTATCAACTGTCTAACTCCAGTTTCAGGGGATCTGCCT
TCTTCTGGTCTACTAGGGTACTGCATACACATGCTGC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTTTAAAAGGACATGAGAACGGGAGGGGACATGGGTAAGATCC
AGCAGGAGCCAGAGAGATGAAATACGAGTGGATATGATCAAAATTCATTG
TAGGCATATATGAAATTCTCAAAAAATCAATTTTAAAATATCACATTAAG
AACCCCACCTGGGAGGGAGTATGGGGAGGGAAATGGGAGGTGTACTTTTT
CTCCCCCTTGCTCTTTTCCTCTCGTCTTACATCGCCCCCATCCACCTTTT
ATTTAGCGAAAGGCACTTGCTCTCCTGGAAAAGGTCTTTAATGGTTTCCC
CCCCCCCTCCTCCCTTTTTTATTTATGGTATAGCGTTTTTCTCTTTTTTC
TCCCAAAAAAAAAAAACAAATCTTTTCTGTGGGGGGTTTCTATATTCCCT
AATCCTTCCTTCACCAATTCCTTCCCTCTTTTCTTCCTCTCCGCTCTTAC
ACCTACATCCCCTCTTCCCTCCCATTTTTCACCTCTCTCTCTGCGTTCAC
CGTCATCATGCCCTTTACGTCCCCTATATCAATGCCGTACCCATCTATCC
ATATTTTTACCCCTTTTTCTTCTATCCCCTTACTTCTTCTCTTTACTTAT
TAATCTCCTCCCCTTCCCCTAACCCCAATGTTCCCATATCCCCTTCGCAT
TCCATCTCATCACAACACCATTAAACCCTGTTGGCTTCTCGCCGATTTCT
TCTTGCTTTCCATATACAACCACATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_g17.b1 MSMg01no188_g17.b1 CHROMAT_FILE:
MSMg01no188_g17.b1 PHD_FILE: MSMg01no188_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:04 2005
         (310 letters)



>mm_chr8_82174646_82175355
          Length = 710

 Score =  586 bits (303), Expect = e-172
 Identities = 306/307 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaaacatttaaacagtgctagctagccatcaaattccaactgatgcaattaaat 63
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 510 ggaattcaaacatttaaacagtgctatctagccatcaaattccaactgatgcaattaaat 451

                                                                       
Query: 64  aaacagactaaaaaccttagggaaagtctttgacaattaagatataaaacacctttgaag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aaacagactaaaaaccttagggaaagtctttgacaattaagatataaaacacctttgaag 391

                                                                       
Query: 124 ttttaaaaatttttagtagaacgtaatatattaactttccagttattttattttattgtt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ttttaaaaatttttagtagaacgtaatatattaactttccagttattttattttattgtt 331

                                                                       
Query: 184 ttacttaagtattctacagtttacctgtacataagtgaaagggcacttatttccacttgt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttacttaagtattctacagtttacctgtacataagtgaaagggcacttatttccacttgt 271

                                                                       
Query: 244 cctacccattcctgtattgaggaaagaaaagttggcatgtaagtatctcactttttacaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 cctacccattcctgtattgaggaaagaaaagttggcatgtaagtatctcactttttacaa 211

                  
Query: 304 tatacat 310
           |||||||
Sbjct: 210 tatacat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)