BAC Information

Click to search

BAC

Clone NameMSMg01-188M09
Chromosome8 (Build37)
Map Location 43,977,690 - 43,977,972
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC671994, Zfp353, EG620772, LOC628212
Downstream geneTriml1, LOC622082, EG622117, LOC100039417, Zfp42, Adam26b, Adam26a, EG384813, Adam34, EG384814, LOC100039472, LOC547011, LOC622263
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188M09.T7 (MSMg01no188_m09.b1)MSMg01-188M09.TJ (MSMg01no188_m09.g1)
ACCAG379684AG379685
length752776
length of high quality
(start - end)
311 (57 - 367)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no188_m09.b1 PHD_FILE: MSMg01no188_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:32 2005CHROMAT_FILE: MSMg01no188_m09.g1 PHD_FILE: MSMg01no188_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCCATTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTGCACTGGATCCATCTGGCCCTGAGCTTTTCTGG
TTGGGAGACTTTTAATTACTGCTACTGTTTCACTGGGGGGTTATGGGCCT
ATTTAAATTGCTTATCCTATCTTGTTTTACCTTTGGTGAATTATATATAT
CAAGAATTTCATCCATTCCCTTTAGGCTTTCCCATTTGATGGAACACAGA
TGTTTGAAATATATCATTATGATTCTCTGAATTTCCCTGTTTATTTTTTA
ATGTGTCCCTTTCATATCTAATTTTACTAATGTGAAACTTTTCACTCCAT
AGTTTAGTTCATTTGTTTTTTGTTTCCCCACCCCCACTCATATCTTCCAA
GAGTAAATTCTTCATTTCTCTGACTCTTTGTATTTATATTGTTGCTATTG
TTTGTTTCTCTCATTGATTTCTGTCCAGAGTATGATTATATTTTGTAAAA
TACTCTTTTTGGTTATTATTTATTCATTTTGTTCAAGCACTTTCAGGTGT
ATTTCTTATTTTCTGATATGATTACTTTCCAGCCCGTTTTTGATATTGGT
ATGTATTGCTATGCACCCGTCTCCATATGTCCTCCCCCTGTGTTTTTCAG
GTTCCTATTCGTCGCATTTCCTTCTTACTCTATTCTACTCCCTTAACTTC
CCCCCCTCCCTTTCTTTTACCTCTTTTTTTTTCTTTCTTTTAATTTCATT
CT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCAAAAAAGTTAAATTTATGTA
TAAAAACTATTGTACAGAGATTACGTGGAGGGTACTGTACTGTGTCCTTT
CTGCTCAATGTTTCTCTAAGCATCAAACTGCTTTAATGAATAAACTTAAT
GATAAAATGCTTTTCAATGTCACTGGTTTTGATTTTCAAATCTCAAGTCA
GTTAATAAACCATATTGTTTCAGTTTGGATACTCATTAGCGTTCACTTAA
TACACTATATTTAATTATTATTTTTTAGATTGTTAAGGTGAAATACATTT
TAGGTTTTGTTTTTTTTTATGCCCCACGCCAGCTGACATCTCTAAAACTC
ACAAGGAATTTGAAAGCCGTAATGAAGTACTTTACCATCCTACAGCACAG
GCATTTATTTTTTGCCATTGCCGTTTGTCTGCGCTACATTCCCATTGTTA
CCTAGGTTAACTTTGAACTCTTGATTTTAATTGATGTTCATATCTCACCC
CCTCATAAATCCCGTCTGCCTGTTCCCGCCTCTTCTTCCCCTTACCTTTT
TTACTAATCTTATCCTTTTACACTTCCACCCCCTTTTCCTTATTCTTATT
ATCCCTCCCCTTTCCTCTCCCCTATTATTTCCCCTTCCCCTTCTCTTCCC
ATCCTTTTAACTCCTTATTTATCTCTTCCCCCCTCCCCCTCACCCTCTCC
ACTTCTTTCTCCTCCTCTCCTCATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_m09.g1 MSMg01no188_m09.g1 CHROMAT_FILE:
MSMg01no188_m09.g1 PHD_FILE: MSMg01no188_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:32 2005
         (286 letters)



>mm_chr8_43977490_43978175
          Length = 686

 Score =  547 bits (283), Expect = e-160
 Identities = 283/283 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcaaaaaagttaaatttatgtataaaaactattgtacagagattacgtggagggtact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcaaaaaagttaaatttatgtataaaaactattgtacagagattacgtggagggtact 260

                                                                       
Query: 61  gtactgtgtcctttctgctcaatgtttctctaagcatcaaactgctttaatgaataaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtactgtgtcctttctgctcaatgtttctctaagcatcaaactgctttaatgaataaact 320

                                                                       
Query: 121 taatgataaaatgcttttcaatgtcactggttttgattttcaaatctcaagtcagttaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatgataaaatgcttttcaatgtcactggttttgattttcaaatctcaagtcagttaat 380

                                                                       
Query: 181 aaaccatattgtttcagtttggatactcattagcgttcacttaatacactatatttaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaccatattgtttcagtttggatactcattagcgttcacttaatacactatatttaatt 440

                                                      
Query: 241 attattttttagattgttaaggtgaaatacattttaggttttg 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attattttttagattgttaaggtgaaatacattttaggttttg 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)