Query= MSMg01no189_b22.b1 MSMg01no189_b22.b1 CHROMAT_FILE:
MSMg01no189_b22.b1 PHD_FILE: MSMg01no189_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:00 2005
(305 letters)
>mm_chr8_67890549_67891253
Length = 705
Score = 364 bits (188), Expect = e-105
Identities = 248/304 (81%), Gaps = 56/304 (18%)
Strand = Plus / Minus
Query: 2 cacatatcacacaaagaaataacagaagaaaatgctaataatccttcttcaaacacatgg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cacatatcacacaaagaaataacagaagaaaatgctaataatccttcttcaaacacatgg 258
Query: 62 caatacttcccacaaaatattaaggacaaacacatgggacaggatctgatggtgtccttt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 caatacttcccacaaaatattaaggacaaacacatgggacaggatctgatggtgtc---- 202
Query: 122 ctttctttctttctttctttctttctttctttctttctttctttctttctttctttcttt 181
||||||||||||||||||||||||||||||||
Sbjct: 201 ----------------------------ctttctttctttctttctttctttctttcttt 170
Query: 182 ctttctttcttcctacatgccattttccatacacatacatacatacatacatacatacat 241
|||||||||||||||||||||||||||||||| ||||
Sbjct: 169 ctttctttcttcctacatgccattttccatac------------------------acat 134
Query: 242 acatacatacatacatacatacatacatatagatggacagtggtagcataagccctttgt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 acatacatacatacatacatacatacatatagatggacagtggtagcataagccctttgt 74
Query: 302 ccta 305
||||
Sbjct: 73 ccta 70
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space: 206016
Effective search space used: 206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no189_b22.g1 MSMg01no189_b22.g1 CHROMAT_FILE:
MSMg01no189_b22.g1 PHD_FILE: MSMg01no189_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:00 2005
(287 letters)
>mm_chr8_67801986_67802672
Length = 687
Score = 551 bits (285), Expect = e-161
Identities = 285/285 (100%)
Strand = Plus / Plus
Query: 1 atatacttgaagcagaagccatgttggaacactgcttggtggctctattgcttctaatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatacttgaagcagaagccatgttggaacactgcttggtggctctattgcttctaatta 260
Query: 61 aaaagcttaattagccttcttatttctcaacagagcccccttaacaggtaactctaggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaagcttaattagccttcttatttctcaacagagcccccttaacaggtaactctaggca 320
Query: 121 gtctcatgctgacagctaaagccaagtaggacaatggttaatgttgaaattatatggtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtctcatgctgacagctaaagccaagtaggacaatggttaatgttgaaattatatggtga 380
Query: 181 agtaaaatactaaatcataagttagtgaaactttgttggagtggattgaatatattaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtaaaatactaaatcataagttagtgaaactttgttggagtggattgaatatattaaaa 440
Query: 241 tgtgcagaatatcttggtcaggatagaagtggctggaataatata 285
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgcagaatatcttggtcaggatagaagtggctggaataatata 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
