BAC Information

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BAC

Clone NameMSMg01-189H06
Chromosome8 (Build37)
Map Location 46,539,727 - 46,630,459
singlet/doubletdoublet
Overlap geneSorbs2
Upstream geneLOC100039508, Fat1, LOC100039673, Mtnr1a, EG622523, F11, Klkb1, Cyp4v3, BC035537, Tlr3
Downstream genePdlim3, Ccdc110, 1700029J07Rik, 1810047C23Rik, Ankrd37, Lrp2bp, Snx25, 4933411K20Rik, Slc25a4, LOC621269, LOC100039875, LOC667325, Helt, LOC667337, Acsl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189H06.T7 (MSMg01no189_h06.b1)MSMg01-189H06.TJ (MSMg01no189_h06.g1)
ACCAG380135AG380136
length794718
length of high quality
(start - end)
130 (104 - 233)318 (401 - 718)
definitionCHROMAT_FILE: MSMg01no189_h06.b1 PHD_FILE: MSMg01no189_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:26 2005CHROMAT_FILE: MSMg01no189_h06.g1 PHD_FILE: MSMg01no189_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,539,727 - 46,539,852)(46,630,142 - 46,630,459)
sequence
TCCTCTCTCTCCCGTTTTTCGTNCCCCTCACTTTTCTTTAATTCTCTCTT
TCCCTTGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTGCCAATCATTTCCTTCGCGTTGGCGAGCGAGCTGCA
GATTGCTGTTCACAAAGTCCTCAGATTACCCTCAGGGTGCTGAGAGAATA
TTATAATATATTCCAGTTCTGCCTATTGACCACTAGAGGTCATTGTTGTT
CTCTGGATGTACAGCCAAGAGTTCTAACAGGAAACCATAGGAAGCCTACA
ATGCAGGGTACAAGTAGTAGACCTGGAATGCCAGGGCTGTGCCCATGCAC
CACGGCTGCCAGTCACATTGCCAACAGAACATCACCCCCACGCTGAGTAT
CGGAGAATAGGAGAGTATCTTCTACACCCTGTTCTACTCCCTTAAGTCTC
TTCCTATGTGTTGAGCTCTCGGTACCTATCTGTGATCATTCTATGCTCTC
TGGCAGGTGTTGGTCCCTCTCATTGAGCACCTTAAGACAGGAATTTACCC
ATCGGCCTGATACTTTAATGCGGATCATCTCTCCCTGAGGAGACTACTGA
GTCTCCTGGGGGATATGGCTGCCCATCTTTTCTTTCGCTTCCTTTCTTCC
CATCTCTGTGGGTGAATATCTCCTTGCTCTCCATTTCAAGTGCCCCAGAT
TCTCAGTGATCACTTTTGGTTTTTTCTCACAGCACTCCGCTTGATTTACG
GTCCCTTGTTATCTACCGGCATACTAACCTCTCGCTTTACAGAN
NNTTATGTTTNNNNTTTTTACTATGAXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAC
AAAAGAATATTCAATCCTTTTTAAGAGGAGTGTTTTGACATGGACTAAAT
AGTCATTGAAGTTGCTTATAAAACAGTCATTCACAAAGCAAGGTTTAAGA
ACAATAGTTAATGTTCTACAAAGGAAAAATTAGCAACAAATAAATGAATA
GTATTCTATGAAAATGAAAAATTAGCATACAAAGTGGAATACTATTTAGC
ACTAAATAAAAATAGAGTTAATTTTTTTCCAAAAAAATGGATAGACTTCA
AGTGCATAAGATTAAGTGAGGTCACAATTCTCCCATAATGCACCAAATAA
AAAAAACCCTGCATATTCTCTTTCATATGCTGAATGAATCTAGCTAGCAA
TATAGGTAAGTATATAAACAAATATACCCATGGATACAGAAGAACAGGAA
GAAAAAGACAATAAAGGCTAAATATTAGAGGATGAAGAAAGATAGAATAA
GGTAATGAACATGAACTATGAAAGAGGTATGCTTTCTTGGTGGTTTAAGA
TAACAATAATGGAATATTGTATTTTTATTACCAAAACATCTTACTTACTT
GTAGATCATTGGTCTCAGAATACCAATATGGCAGATAATTTAGCCTGAGT
AAGCATATGAGCTAAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_h06.b1 MSMg01no189_h06.b1 CHROMAT_FILE:
MSMg01no189_h06.b1 PHD_FILE: MSMg01no189_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:26 2005
         (130 letters)



>mm_chr8_46539523_46540052
          Length = 530

 Score =  197 bits (102), Expect = 2e-55
 Identities = 120/126 (95%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgccaatcatttccttcgcgttggcgagcgagctgcagattgctgttcacaaag 64
           ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 205 gaattctgccaatcatttccttcccgttggcgagcgagcagcagattgctgttcacaaag 264

                                                                       
Query: 65  tcctcagattaccctcagggtgctgagagaatattataatatattccagttctgcctatt 124
           |||||||||||||| ||||||||||||||||||||| |||| |||||||||||||| |||
Sbjct: 265 tcctcagattacccacagggtgctgagagaatattaaaataaattccagttctgcccatt 324

                 
Query: 125 gaccac 130
           ||||||
Sbjct: 325 gaccac 330


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 130
Length of database: 530
Length adjustment: 8
Effective length of query: 122
Effective length of database: 522
Effective search space:    63684
Effective search space used:    63684
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no189_h06.g1 MSMg01no189_h06.g1 CHROMAT_FILE:
MSMg01no189_h06.g1 PHD_FILE: MSMg01no189_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:26 2005
         (318 letters)



>mm_chr8_46629942_46630659
          Length = 718

 Score =  607 bits (314), Expect = e-178
 Identities = 317/318 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaaaccctgcatattctctttcatatgctgaatgaatctagctagcaatataggtaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 aaaaaaccctgcatattctctttcatatgctgaatgaatctagctagcaatataggtaag 459

                                                                       
Query: 61  tatataaacaaatatacccatggatacagaagaacaggaagaaaaagacaataaaggcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tatataaacaaatatacccatggatacagaagaacaggaagaaaaagacaataaaggcta 399

                                                                       
Query: 121 aatattagaggatgaagaaagatagaataaggtaatgaacatgaactatgaaagaggtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aatattagaggatgaagaaagatagaataaggtaatgaacatgaactatgaaagaggtat 339

                                                                       
Query: 181 gctttcttggtggtttaagataacaataatggaatattgtatttttattaccaaaacatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 338 gctttcttggtggtttaagataacaataatggaatattgtatttttattaccaaaacgtc 279

                                                                       
Query: 241 ttacttacttgtagatcattggtctcagaataccaatatggcagataatttagcctgagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ttacttacttgtagatcattggtctcagaataccaatatggcagataatttagcctgagt 219

                             
Query: 301 aagcatatgagctaagtg 318
           ||||||||||||||||||
Sbjct: 218 aagcatatgagctaagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)