Query= MSMg01no189_l13.b1 MSMg01no189_l13.b1 CHROMAT_FILE:
MSMg01no189_l13.b1 PHD_FILE: MSMg01no189_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:46 2005
(313 letters)
>mm_chr8_104166266_104166979
Length = 714
Score = 594 bits (307), Expect = e-174
Identities = 310/311 (99%), Gaps = 1/311 (0%)
Strand = Plus / Minus
Query: 4 ggaattctgagataagacaatgaggacagctgctctggagagtcacctagactaacagtt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ggaattctgagataagacaatgaggacagctgctctggagagtcacctagactaacagtt 455
Query: 64 aatgatgcatgaccatgtcatttattatggtttgatactggtacttagtgtgagcatata 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aatgatgcatgaccatgtcatttattatggtttgatactggtacttagtgtgagcatata 395
Query: 124 aaccaaatatggcctagtgtgctttcaccagtgcaaggaacattttatgaacttcttgta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aaccaaatatggcctagtgtgctttcaccagtgcaaggaacattttatgaacttcttgta 335
Query: 184 gacaggcttgctgttttgccaattgtaaaatttaggaagttgagctatagagaaggttta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gacaggcttgctgttttgccaattgtaaaatttaggaagttgagctatagagaaggttta 275
Query: 244 aggtttttaaactggttgatgcaggaa-ggggggtacaagtatttaatcttaatattgtt 302
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 274 aggtttttaaactggttgatgcaggaagggggggtacaagtatttaatcttaatattgtt 215
Query: 303 ttatgacaagt 313
|||||||||||
Sbjct: 214 ttatgacaagt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 714
Length adjustment: 9
Effective length of query: 304
Effective length of database: 705
Effective search space: 214320
Effective search space used: 214320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no189_l13.g1 MSMg01no189_l13.g1 CHROMAT_FILE:
MSMg01no189_l13.g1 PHD_FILE: MSMg01no189_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:46 2005
(558 letters)
>mm_chr8_104046339_104047297
Length = 959
Score = 1035 bits (535), Expect = 0.0
Identities = 553/559 (98%), Gaps = 1/559 (0%)
Strand = Plus / Plus
Query: 1 ccttgatagaagaaagcatgccacttaaattaaatgaaagaatctgaaaccgattaagag 60
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 201 ccttgatagaagaaagcatgccacttaaattaaatgaaagaatcagaaatagattaagag 260
Query: 61 taatgtaaattctgagcctgaacttttaa-ttttttccatctaattattattttccattt 119
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 taatgtaaattctgagcctgaacttttaatttttttccatctaattattattttccattt 320
Query: 120 tcttgatcacattatattgaaatggttgaatgtcaatttcctctaccactttacttaata 179
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 tcttgatcacattatattgaaatggtggaatgtcaatttcctctaccactttacttaata 380
Query: 180 gaacctttgtctcctttgagctcttaagaagagttagctttaaatcacactgacttcacc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaacctttgtctcctttgagctcttaagaagagttagctttaaatcacactgacttcacc 440
Query: 240 ctttgcaatttacatatgttgaagaaataaaaggcttttcaagagtcactatgggccctg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttgcaatttacatatgttgaagaaataaaaggcttttcaagagtcactatgggccctg 500
Query: 300 ggaggcctccaaggagtattaagaccttgaattttatgtgagctgcctcaaatacaaacc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaggcctccaaggagtattaagaccttgaattttatgtgagctgcctcaaatacaaacc 560
Query: 360 acaatccctccctatggaatactaatggcatttgtgtacagttacattttcttgtgaatg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaatccctccctatggaatactaatggcatttgtgtacagttacattttcttgtgaatg 620
Query: 420 tttttaaagtctagaggctgcccatgaataaaatagcctttgtgctggtggttaggaaat 479
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttttaaagtctagaggctgtccatgaataaaatagcctttgtgctggtggttaggaaat 680
Query: 480 gtaattcccgctcagatgcaaaaaagacagtgtttcatttgatgtttccagagtccagtt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtaattcccgctcagatgcaaaaaagacagtgtttcatttgatgtttccagagtccagtt 740
Query: 540 tattctgaaataattagtg 558
|||||||||||||||||||
Sbjct: 741 tattctgaaataattagtg 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 959
Length adjustment: 10
Effective length of query: 548
Effective length of database: 949
Effective search space: 520052
Effective search space used: 520052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
