BAC Information

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BAC

Clone NameMSMg01-189M14
Chromosome8 (Build37)
Map Location 108,343,085 - 108,343,363
singlet/doubletsinglet
Overlap geneRanbp10
Upstream geneBC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2
Downstream geneTsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189M14.T7 (MSMg01no189_m14.b1)MSMg01-189M14.TJ (MSMg01no189_m14.g1)
ACCAG380351AG380352
length710756
length of high quality
(start - end)		313 (46 - 358)283 (75 - 357)
definitionCHROMAT_FILE: MSMg01no189_m14.b1 PHD_FILE: MSMg01no189_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:51 2005CHROMAT_FILE: MSMg01no189_m14.g1 PHD_FILE: MSMg01no189_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCTAATTTCTCCTCTCTTACACTCGCCTGCCTCCTCTCTTGGTCA
AGTGCAGTCAGCTGGCCTTGTTGAAGCTCCTACTGTCCCTCCCTGAGCTG
GACTCTTCCAGATGCCTCTGGCTGTACTCTCCTCATTTCTTCCCCTCAAC
CGTACCTTGGAGTAGTCATGCCCTCAGCTCACATATCTGGAGCTGAAACC
CTCAGTTTATACAAAAAGCAAATTCCCACACATTGTTCTCTGACCTCCAC
ACTTGCAATGTGGCAAGCATCTGCCCAGAGACCTGCATCTGCACACACAA
AAGAAGTTTAAATGAGACCCCTNTACTANCAGCTGGACCATAACTCTGCT
TAGCGCTATCCTCCTCTAGCTGAAAAAAAAAAAATGGAGACGAATTTTTT
ATTTATTGCCATGCCACCCTTTTCTCTTTTGTTGCTGGGTAATGAAGGGG
CCCGATGTAAAATACAGGTTATATACAGGATGTGCCTAGCTGAAAATACT
CATTCATTTAAGGATTTAGAATTTTCTGTTCCTGCTTAAATGATGTCTTG
TCCACTACTGAGACTACACATTCCTTCAGTATCAAGCGGATTCTAAGTCC
CTGAAAATTACAGATAGCATTTCTTTATAACCTGGGACTTACTTACATAT
TCTATGGATA

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTTTTCTAGTGGGGACTCCTCACTA
TAACTTGTTGCCTGCATCCAACTATGAACTCAGAATGGGAAGTAAGAACA
CTTTTTAAGATTTAAAAAATTGGTATTTTCTTTGGGGGGGGTATTATCCA
TGTGCTCAAATACACATGTGGATTTCAGAAGGCAACCTAGAAGAGTTGGT
CCCCTCCTTTCTTTTCCTCTGCCAAGTGGGCCCTGGGATTGAAGTCAGCT
CTTCAGTCTTGGCAATGATTACCTTTACCCACTGCTATCTCTATGACTCT
TAGATTTTATTTTATCCCCCCCCCCCGCTTTTTGTTTTATGAGACAGGGT
TTCTCTGTGTAGCCTGAGTGACCAGAAACTTGCTGTATAGACCGGGCTGG
CCTTGAACCCAGAGTTCTGCCTGCCTCTGACTCTCGTGTTGGGATTAAAG
GCATGTGTCATTGGCTTTTGGATTCTTTTAAGTTAGTATTTGTGTGTGCG
CGCGTGCGTGATTCCTACCATCCTTTTTTCCCATTCGCCCCTCTCCTTTT
CCTTCCTTTTTTCTTTTTTCCCATTCTTTCCTTTCCTTTTTCCAATTCTT
CCTTTACACCTCCCTTCTTCCACCATTCCTGTTTATATCCTTCCCCTATT
TTTTTCCGTCGCTCCATTTCCTTTTCTATTTCACTTTTACTTTCCCCCAT
CCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_m14.g1 MSMg01no189_m14.g1 CHROMAT_FILE:
MSMg01no189_m14.g1 PHD_FILE: MSMg01no189_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:51 2005
         (283 letters)



>mm_chr8_108343026_108343708
          Length = 683

 Score =  505 bits (261), Expect = e-147
 Identities = 276/283 (97%), Gaps = 4/283 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttttctagtggggactcctcactataacttgttgcctgcatccaactatgaactcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 338 atttttctagtggggactcctcactataacttgttgcctgcatccaactgtgaactcaga 279

                                                                       
Query: 61  atgggaagtaagaacactttttaagatttaaaaaattggtattttctttggggggggtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 atgggaagtaagaacactttttaagatttaaaaaattggtattttctttggggggggtat 219

                                                                       
Query: 121 tatccatgtgctcaaatacacatgtggatttcagaaggcaacctagaagagttggtcccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 tatccatgtgctcaaatacacatgtggatttcagaaggcaacctagaagagttggtcccc 159

                                                                       
Query: 181 tcctttcttttcctctgccaagtgggccctgggattgaagtcagctcttcagtcttggca 240
           ||    |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 158 tc----cttttcctctgccaagtgagccctgggattgaagtcagctcttcagtcttggca 103

                                                      
Query: 241 atgattacctttacccactgctatctctatgactcttagattt 283
           |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 102 atgagtacctttacccactgctatctctatgactcttagattt 60


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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