BAC Information

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BAC

Clone NameMSMg01-190B02
Chromosome8 (Build37)
Map Location 84,616,695 - 84,617,288
singlet/doubletsinglet
Overlap geneInpp4b
Upstream geneLOC236010, LOC384852
Downstream geneLOC671182, Il15, EG666564, LOC675800, EG666289, Zfp330, Rnf150
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190B02.T7 (MSMg01no190_b02.b1)MSMg01-190B02.TJ (MSMg01no190_b02.g1)
ACCAG380536AG380537
length822734
length of high quality
(start - end)
193 (45 - 237)594 (77 - 670)
definitionCHROMAT_FILE: MSMg01no190_b02.b1 PHD_FILE: MSMg01no190_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:11 2005CHROMAT_FILE: MSMg01no190_b02.g1 PHD_FILE: MSMg01no190_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACTCTAAGATTC
CACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCTTCATTGGTTGNN
GTGNGGNAATATGACAAAGGGGCCTTTGGTAAAAANNANANNNNAAAAAA
AAAAAACAAAAAAANAAAATTAAAAACCCCCCCCCCCAATTTATTATACC
ACACCAAATTATCCCCCCCCCACACGTCTAAACTAAAACTCCCACCTCCT
TATTTATCTTTTACACATTTATAAACCGGGGCCACGGGGGGCCGTCGCCT
TTTTAACCCCGTTCCCACGTGTCCTATCAACTACATGCCATCAGTGATCA
GAGGTACACAGCACAACAGGGAAACCACCAAGGTATCCCCCGCGTTGAAT
AACTCCGCGCGCTACAGACTTACATGTTTTCCGCTTCTATTCCTCACTCT
AATCGTGTGGAACCCGACAAGAAACATATTATCTTTTTTGGGTGAACTCC
GCCTGTCCCCCTTATTTTATTATTCTAACCGCTATATTTTACCCCCCCCC
CTTTTAATTATATTCGCCCCTCCCGTTTCGCCCTTTTTATTACCCACATA
CTCTGATATCTTTCTCACGTCCCATATTTGAAATTCATGCCACCTGTAAT
TTCGGATAGATGCTCACTCCGC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGAGACAGAAACTGTGCAAACAT
GATAAAATGATGTAAAGATACAAAGATCTAGTCCAGGAGGTTGGTGATAG
GAAGATGAAGAAAGTCAGTTCAAGGATTTTTAAAAATTTTTATTTCTATG
AAAACTTAAGCTCCATGTCTCAGAAAGAAGCTACTGTTCTTTCTGAGAAT
GCTGTGGGTAGTAACAAAGGGCACTGAATGTTAGAAACAGCTAAGCATGA
AACAGCACATATATGTTGCTAGAAATGAACATCAAGTACTAAGTTTGAAA
CGTAACTTCACAAAGGGTTGGTATCCCAGTCACAACCTGTCCATAGTGAA
GAAGGGATGTACTGTTGGTCAAAAGGCAACTGTCCTCTCTTAAGCCTTGG
AAGATTGAACAATATTAACAGAGAAGGCCCACGGATAGACAGACACACTT
GGCTGTTCTCTCAACTCTTGTTTGCTTGGGAATTCTGAAAACTGATCAGA
GTTCTCATTTTCTATGTGGCAACCATATTTACAAGTAGGATGGGATGGGA
AAAACACTAAGAATCTAAGTTATTTTCTAAAATTGTATTATACTGCCTGT
GAGGTCAACATGCCCACATGCAATTATGACAGGCATCACTATGATAAATG
ATTTAATAACTGACGAAATACATTATGAGTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_b02.g1 MSMg01no190_b02.g1 CHROMAT_FILE:
MSMg01no190_b02.g1 PHD_FILE: MSMg01no190_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:11 2005
         (594 letters)



>mm_chr8_84616495_84617488
          Length = 994

 Score = 1149 bits (594), Expect = 0.0
 Identities = 594/594 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggagacagaaactgtgcaaacatgataaaatgatgtaaagatacaaagatctagtccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 aggagacagaaactgtgcaaacatgataaaatgatgtaaagatacaaagatctagtccag 735

                                                                       
Query: 61  gaggttggtgataggaagatgaagaaagtcagttcaaggatttttaaaaatttttatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gaggttggtgataggaagatgaagaaagtcagttcaaggatttttaaaaatttttatttc 675

                                                                       
Query: 121 tatgaaaacttaagctccatgtctcagaaagaagctactgttctttctgagaatgctgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tatgaaaacttaagctccatgtctcagaaagaagctactgttctttctgagaatgctgtg 615

                                                                       
Query: 181 ggtagtaacaaagggcactgaatgttagaaacagctaagcatgaaacagcacatatatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ggtagtaacaaagggcactgaatgttagaaacagctaagcatgaaacagcacatatatgt 555

                                                                       
Query: 241 tgctagaaatgaacatcaagtactaagtttgaaacgtaacttcacaaagggttggtatcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tgctagaaatgaacatcaagtactaagtttgaaacgtaacttcacaaagggttggtatcc 495

                                                                       
Query: 301 cagtcacaacctgtccatagtgaagaagggatgtactgttggtcaaaaggcaactgtcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 cagtcacaacctgtccatagtgaagaagggatgtactgttggtcaaaaggcaactgtcct 435

                                                                       
Query: 361 ctcttaagccttggaagattgaacaatattaacagagaaggcccacggatagacagacac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ctcttaagccttggaagattgaacaatattaacagagaaggcccacggatagacagacac 375

                                                                       
Query: 421 acttggctgttctctcaactcttgtttgcttgggaattctgaaaactgatcagagttctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 acttggctgttctctcaactcttgtttgcttgggaattctgaaaactgatcagagttctc 315

                                                                       
Query: 481 attttctatgtggcaaccatatttacaagtaggatgggatgggaaaaacactaagaatct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 attttctatgtggcaaccatatttacaagtaggatgggatgggaaaaacactaagaatct 255

                                                                 
Query: 541 aagttattttctaaaattgtattatactgcctgtgaggtcaacatgcccacatg 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aagttattttctaaaattgtattatactgcctgtgaggtcaacatgcccacatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)