BAC Information

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BAC

Clone NameMSMg01-190L15
Chromosome8 (Build37)
Map Location 95,717,906 - 95,718,221
singlet/doubletsinglet
Overlap geneCes3
Upstream gene4933436C20Rik, Irx5, Irx6, LOC100041325, Mmp2, Aytl1, Capns2, LOC100040752, Slc6a2, EG244595, LOC382044, Es1, LOC676523
Downstream geneEs22, AU018778, Ces1, 2310039D24Rik, Ces7, Gnao1, Amfr, Nudt21, Ogfod1, Bbs2, Mt4, Mt3, Mt2, Mt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190L15.T7 (MSMg01no190_l15.b1)MSMg01-190L15.TJ (MSMg01no190_l15.g1)
ACCAG380967AG380968
length699864
length of high quality
(start - end)
322 (45 - 366)64 (198 - 261)
definitionCHROMAT_FILE: MSMg01no190_l15.b1 PHD_FILE: MSMg01no190_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:05 2005CHROMAT_FILE: MSMg01no190_l15.g1 PHD_FILE: MSMg01no190_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTCTGAACGGGGGCTTTCATGTTTCCCTGGGAGAAGGGTGTGCAGT
TTAGATCAAATTTCTACTCCTTGACTCAGAAATGTCACTTCTTACATTTC
TCCCCAAATTCCTGTGATTATGTGTTACAAATTTATCACCTTTGTCTTAC
TGTCAATAACATAGAAAGAACTTAGCCCAAATAAAAGATTGGATGCATAC
AGTCTAATTTCATATCCAGTTAATGTAACTGCTATATATTGGCTGTTACA
TTGATATGTAGAATAATATCGGTGTTATAAATGTGCAAATAGTCACCCAT
ATTTTCCATACTCACACTGCCTGTATAAAGGGAGGACATACACAGACATA
AGACTGGAAATATGACCTCAAATGCTCACAGTGATTCTGAGGAATTGGAT
TGTACCTGATTGTTAACTTTGTTACATTTGCTTCTATGTATTGCTCTGCC
ATTTCTGTTTTCAGTATTTATACCTTACATTTGCAGTCAGAATGGAAAAA
ATAGCAAATGATATTTTTAGGAGAAAAGCATGCAGTAGTAAGGACACCAC
CAGGAGTGGAATTCTTCAATCCTCACAAGTACCTTGCCAAGAGAAGAAAC
ACTGACTGCACTGACATTCTTTAGGCTATCTGGACTTGATGGGCTTTTC
TTATCAAAAACATTTTTAATCACTCTCAAGAGGTATGTAACAAAANNNNC
CCACTATGACAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATTTGTAGAACAGTACTGT
TCCTTGTGTGTACACTGCTGATATCCAGAGAGAGGAAGTCACTTGTAAGG
ATTACATAGCTAGGAGGATTAGGGACAAGATGACCTGACTCCCATGTCCA
TCGCTCCAGATTAGCGACTTGGCATCCCCCAGAGGAACCTATCCCCTTGT
AAGCGAAATTTCTAGCTTTTACAACAACCCTGTTTGAGCAGTATGCACCA
TAACTTTCTATGCTCAGGAGACTGTGATGTTTTAGGAGGCCTGGAGCCAT
CAACAGGAAGCAGAGTTTGCGTAGGTTTCCCAAACTTTGCCCCGTTGAGA
AGTGGGCGGAAATGCTTTCCCCGCCCCCCCTAAAACCCTACCTAAAATCG
TCGGGGGCGGCGTGGCGAACCCCACCTTCCGCCCCAATCTCCGATTTTAT
TCAAATCTTTCCTAAATCCCCTCTTCCTGCCATTATTAACCCCCCCCCTC
ATTACCCTTATATCTTCCACGCCACGAGCCTAATTTATCCCTTTTTTCCA
CTGATTTTCGTACCCACCATCTCCCGTATCGTTGTTTTATTTTATACTTT
AACATACTACCTATTATCCGAATTCCGAGTCGATTTTATTACCTTCTCCT
ACCCTTTTTCCACTTTTACACCCCCCCACCATATGAAGATTAGTCGCCCT
TCTTTTTTATAATCCCCTTAAAGTCTCCTTCTTCACTCCCCCTCTAATGT
CCCTCTCCTTACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_l15.b1 MSMg01no190_l15.b1 CHROMAT_FILE:
MSMg01no190_l15.b1 PHD_FILE: MSMg01no190_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:05 2005
         (322 letters)



>mm_chr8_95717702_95718423
          Length = 722

 Score =  611 bits (316), Expect = e-179
 Identities = 316/316 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctctgaacgggggctttcatgtttccctgggagaagggtgtgcagtttagatca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctctgaacgggggctttcatgtttccctgggagaagggtgtgcagtttagatca 264

                                                                       
Query: 65  aatttctactccttgactcagaaatgtcacttcttacatttctccccaaattcctgtgat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatttctactccttgactcagaaatgtcacttcttacatttctccccaaattcctgtgat 324

                                                                       
Query: 125 tatgtgttacaaatttatcacctttgtcttactgtcaataacatagaaagaacttagccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatgtgttacaaatttatcacctttgtcttactgtcaataacatagaaagaacttagccc 384

                                                                       
Query: 185 aaataaaagattggatgcatacagtctaatttcatatccagttaatgtaactgctatata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaataaaagattggatgcatacagtctaatttcatatccagttaatgtaactgctatata 444

                                                                       
Query: 245 ttggctgttacattgatatgtagaataatatcggtgttataaatgtgcaaatagtcaccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttggctgttacattgatatgtagaataatatcggtgttataaatgtgcaaatagtcaccc 504

                           
Query: 305 atattttccatactca 320
           ||||||||||||||||
Sbjct: 505 atattttccatactca 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)