BAC Information

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BAC

Clone NameMSMg01-191I09
Chromosome8 (Build37)
Map Location 48,415,179 - 48,415,400
singlet/doubletsinglet
Overlap geneStox2, 4930448N21Rik
Upstream geneLOC667337, Acsl1, Mlf1ip, Ccdc111, Casp3, Irf2, Enpp6
Downstream geneD030016E14Rik, Rwdd4a, LOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2, LOC100040113, Dctd, Odz3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191I09.T7 (MSMg01no191_i09.b1)MSMg01-191I09.TJ (MSMg01no191_i09.g1)
ACCAG381507AG381508
length901813
length of high quality
(start - end)
122 (96 - 217)223 (149 - 371)
definitionCHROMAT_FILE: MSMg01no191_i09.b1 PHD_FILE: MSMg01no191_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:10 2005CHROMAT_FILE: MSMg01no191_i09.g1 PHD_FILE: MSMg01no191_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCCTTTTTTTTAAATTACNCCCTTTACCCCCGGGATTAGTTATATTAT
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATAGGTAGTTTCTAAGTGTTACACAAAGACCCCTATGGCCTCTA
CGTTTTGGTATTGATACTCTCATTTATTTCTCTTGAGTGTGGACTGGGAC
TGAGTAAGCTCCTTGCTGGATAAGATTGATCTTGGGATGGTCCAGTGTGA
ACAGCAATCATTTAAGAAAGTTCTGGAAGGGAGTCGGTTACGATAAAGAA
AATGTGTCCAGAGGATCTTTGAGATTCCTTCTTTCCTATGATAATACATT
TTTTTTTACGCACAGTATTATTGTGTTAATGTTCAGAATCCGAATCCTCG
CATTTAGTAATTTTTTTTTTTCTCGCCCCCCCCCCCCCCCACAAAGATAA
GATATTTCGCACCACCGCTCTCATGTTTACCAGGGTTAAAAAAAGAAAAT
TATCCGAGGCCGCGTGGACTCCCAGGTTCTTTGTTTTATCATTCCTCCTG
TATTTGCACTTTGTTGGTAAACCTCCTTATTCATTACTTTGTGCTTCTTT
AGATAGTTAAATTTTAGCCCCTTGTTATCCAATTTGGGAACCTTCCTCCC
ATATTATGCCCCGTGCCCGAATCGTAATTCCGCGTCTGCGTCCAAGACCC
CTGTGACTCCTTGGACTCAAACTTATTTTACTGCCCACCCTTCGTTACTT
TTTCTGTTTTTAATTTCACCTTTAAAAATATGATTAATTTTTATATTTTG
GGCAGCTCTAAACTTCTTGTGTTAATTTGAACCCACTTATTTCATACTTT
ATCTCCCCCTCTGTCTTCGTATAACCCTCCTTATTTCTCTACTCTATCCC
G
TCTTTTTCCCCTTCCCCTTNCGGTCTGATTATAATAAAATAACTCCTCCT
TTTTACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTAGCAGGCACACATCC
ATCGCAGAGTTCTCTCAACAGACAGCGCCCTCCAAGTAGCACTTCTACCA
CGTTCAAGGTTGGAATAGCCGGAACTCCCACTACCCTCTTCAGTGTGACA
AAAGTTATAACTGTGACTCCAAAGAGCATCCAAGGATGGGTGTGCAGGGA
AAATTAGCCATAGGAAGTTTTAGATATGAACACCTTTATTGCTAGCTAAT
AGCTCACCCTTTGTTTTTTGCAGCGTTTTATGTAAATGTCCCTAGAGGAC
CCCGGAGCTGTATTTTAATANNTTCCCGAGACGNAGCCGCATCTTTTGGG
AACTGAAGCCTATAGGTAGGATTCCAACAAATTGAGGAAATGATCTTTTT
GGGGATTTACTCGATTGTTTGATTCTTTGCTCATTATGAGCGACCTGTCA
TTATATTCATACCCCCTTAAAGAAGGTTCCCGAGCCCATTATCAATGGTT
TGTAACCTATCATGTGGTCTGCTGCGAAATTGTAACTCAGGACCCCCGAC
CCGAGTATTCCGTGTTTCTTACCCGCCGAATTAATTCTCCCCGGATCCGG
TGTAAATAGCCCCTAAAAGGCGGAGGAGGTAGGAAACCCCAGCCCCCCCC
ACTTTATACCCTCTTATATTTACCACCACTATTTATTCGCTCACACACGT
TTTTTATTCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_i09.g1 MSMg01no191_i09.g1 CHROMAT_FILE:
MSMg01no191_i09.g1 PHD_FILE: MSMg01no191_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:10 2005
         (223 letters)



>mm_chr8_48414979_48415601
          Length = 623

 Score =  422 bits (218), Expect = e-122
 Identities = 221/222 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatcgcagagttctctcaacagacagcgccctccaagtagcacttctaccacgttcaag 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 ccatcgcagagttctctcaacagacagcgtcctccaagtagcacttctaccacgttcaag 260

                                                                       
Query: 61  gttggaatagccggaactcccactaccctcttcagtgtgacaaaagttataactgtgact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttggaatagccggaactcccactaccctcttcagtgtgacaaaagttataactgtgact 320

                                                                       
Query: 121 ccaaagagcatccaaggatgggtgtgcagggaaaattagccataggaagttttagatatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaaagagcatccaaggatgggtgtgcagggaaaattagccataggaagttttagatatg 380

                                                     
Query: 181 aacacctttattgctagctaatagctcaccctttgttttttg 222
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacacctttattgctagctaatagctcaccctttgttttttg 422


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 623
Length adjustment: 9
Effective length of query: 214
Effective length of database: 614
Effective search space:   131396
Effective search space used:   131396
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)