BAC Information

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BAC

Clone NameMSMg01-191P05
Chromosome8 (Build37)
Map Location 58,380,291 - 58,380,933
singlet/doubletsinglet
Overlap geneAdam29
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356, LOC664916
Downstream geneGlra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431, EG624433
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191P05.T7 (MSMg01no191_p05.b1)MSMg01-191P05.TJ (MSMg01no191_p05.g1)
ACCAG381788AG381789
length658716
length of high quality
(start - end)
313 (5 - 317)640 (77 - 716)
definitionCHROMAT_FILE: MSMg01no191_p05.b1 PHD_FILE: MSMg01no191_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:44 2005CHROMAT_FILE: MSMg01no191_p05.g1 PHD_FILE: MSMg01no191_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAGGATCCGCGGAATTCATTCTCATTGGACCTTTGCCTGCTTCTCTGGCT
CATGCCTGTCTCACTTTTTCTCACTATCAATGTTTTATCTCACTTTTCTG
TATCTCCTTTACACACTATGTGTGATTACCCAATACTCACTTTACAATTA
GTGGGTATACTGCTGGTTTTCTCCTTGGCTTTTGCTGACACCAACATGTG
ACCTTGCTTGCATCCCTAGGACCCTCTAAAGCATACTTTAATTTTAACTG
CCAATCCATCTGAGCTCTTACCCTAATGAGAGACAATGTCTGGGAACTTT
GGATCAGTTTTGTTCTTTTTCTACCCCCCACCCACCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTGACTCACTGAACTCGTGGAACTT
TCCTTTTCTTCATCACACACATACAAATAGTTGTACCACACACACACATG
AACACCCTCATAGATACATACCCATAAAAAATACTCATACATGAGTGCAT
GCATGCACACACATATTTATGCACACTCTGTCTCATCCACTCAGTCACAC
ACACATCCTACTTGCCCTCGATTTTTCTGATTTGCGTACCATGATATCGA
GCCTACTGCCAATATTTCCCAAAATATCGACGTGTTTACATTTTTTTAAC
CCACTAAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATATTTCAAATAAGATTGACTCT
GAAGTTGTTGTAAAATATGTGTAAGTCAGTATTCTTTGTAAATTCATATT
TCTGTTTTCATTGACTACATAGTCTATTCAACTGTTAATACCATTAAAAC
TTTCTTTTGTTCTGATACTCGAAGAGCAGACACAACTTGTAAAATAATTA
AAATTCAACTTTTTACACATGTGCAAATGTTTTATATATATATGTATATA
TATAAATATATATACATATATATATATATTTAAACACATAGTTTGTTCTT
GTGTATATTTTTTATCTTACCCCCCTATGTTTAGTAATGTTTTAAAAACA
ATTTAGCATAAATAAGACTTACATAGAAAATACATTAGTCTCTTCTACTA
ATAATACAAATGAATGGGTCAAATTTTATGGCAGAAAATGGTTTCATCTC
CTAACTTTCAGACATGAATCATTCAAAGAAGGAATTTGCCCCAGGCCATG
TTTAGATAACAGATATTTGGCTTCTGTGTGGCTAATAGAAACTGGTTGTT
AGGAATCAACAAATGATCTGCTCTGGGTCAAAATATCCTGAGACTAGGGT
TATCAAATGGTATCAAATTCTTTGCGAGCACTTCTAAAAAACAGTGCCAT
AACAGACAAATAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_p05.g1 MSMg01no191_p05.g1 CHROMAT_FILE:
MSMg01no191_p05.g1 PHD_FILE: MSMg01no191_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:44 2005
         (640 letters)



>mm_chr8_58380093_58381133
          Length = 1041

 Score = 1106 bits (572), Expect = 0.0
 Identities = 624/648 (96%), Gaps = 13/648 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatatttcaaataagattgactctgaagttgttgtaaaatatgtgtaagtcagtattctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 aatatttcaaataagattgactctgaagttgttgtaaaatatgtgtaagtcagtattctt 258

                                                                       
Query: 61  tgtaaattcatatttctgttttcattgactacatagtctattcaactgttaataccatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgtaaattcatatttctgttttcattgactacatagtctattcaactgttaataccatta 318

                                                                       
Query: 121 aaactttcttttgttctgatactcgaagagcagacacaacttgtaaaataattaaaattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aaactttcttttgttctgatactcgaagagcagacacaacttgtaaaataattaaaattc 378

                                                                       
Query: 181 aactttttacacatgtgcaaatgttttatatatatatgtatatata--taaatatatata 238
           |||||||||||||||||||||||| |||||||||||| ||||||||  || |||||||||
Sbjct: 379 aactttttacacatgtgcaaatgtattatatatatatatatatatacatatatatatata 438

                                                                       
Query: 239 catatatatatatatttaaacacatagtttgttcttgtgtatattttttatctta----- 293
            |||||||||||||||||||||||||||||||||||||||||||||  |||||||     
Sbjct: 439 tatatatatatatatttaaacacatagtttgttcttgtgtatatttcctatcttatatgt 498

                                                                       
Query: 294 -cccccctatgtttagtaatgttttaaaaacaatttagcataaataagacttacatagaa 352
            |     |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ac-----tatgtttagtaatgttttaaaaacaatttagcataaataagacttacatagaa 553

                                                                       
Query: 353 aatacattagtctcttctactaataatacaaatgaatgggtcaaattttatggcagaaaa 412
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aatatattagtctcttctactaataatacaaatgaatgggtcaaattttatggcagaaaa 613

                                                                       
Query: 413 tggtttcatctcctaactttcagacatgaatcattcaaagaaggaatttgccccaggcca 472
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 614 tggtttcatctcctaactttcagacatgaatcattcaaagaaggaatatgccccaggcca 673

                                                                       
Query: 473 tgtttagataacagatatttggcttctgtgtggctaatagaaactggttgttaggaatca 532
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 agtttagataacagatatttggcttctgtgtggctaatagaaactggttgttaggaatca 733

                                                                       
Query: 533 acaaatgatctgctctgggtcaaaatatcctgagactagggttatcaaatggtatcaaat 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 acaaatgatctgctctgggtcaaaatatcctgagactagggttatcaaatggtatcaaat 793

                                                           
Query: 593 tctttgcgagcacttctaaaaaacagtgccataacagacaaataaatg 640
           |||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 794 tctttgggagcacttctaaaagacagtgccataacagacaaataaatg 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1041
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1031
Effective search space:   649530
Effective search space used:   649530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)